Difference between revisions of "CHD-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7456 PWY-7456] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction CHD-RXN == * direction: ** reversible * common-name: ** choline dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7456 PWY-7456] ==
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== Reaction CHD-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** reversible
 
* common-name:
 
* common-name:
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** β-(1,4)-mannan degradation
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** choline dehydrogenase
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== Reaction(s) found ==
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* ec-number:
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* [[MANNPISOM-RXN]]
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** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99.1]
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* [[PHOSMANMUT-RXN]]
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== Reaction formula ==
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== Reaction(s) not found ==
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* 1 [[Acceptor]][c] '''+''' 1 [[CHOLINE]][c] '''<=>''' 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[Donor-H2]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.78-RXN 3.2.1.78-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12977 RXN-12977]
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* Gene: [[SJ12409]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15202 RXN-15202]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15344 RXN-15344]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.100-RXN 3.2.1.100-RXN]
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* Gene: [[SJ09287]]
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{{#set: taxonomic-range=tax-2}}
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** Category: [[annotation]]
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{{#set: common-name=&beta;-(1,4)-mannan degradation}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction found=2}}
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** Category: [[orthology]]
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{{#set: completion rate=0.29}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=7}}
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* Gene: [[SJ06047]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ22552]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ07158]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s)  ==
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* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria):
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR115763
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17436 17436]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01025 R01025]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P17444 P17444]
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{{#set: direction=reversible}}
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{{#set: common-name=choline dehydrogenase}}
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{{#set: ec-number=ec-1.1.99.1}}
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{{#set: nb gene associated=5}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction CHD-RXN

  • direction:
    • reversible
  • common-name:
    • choline dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria):
    • 2 reactions found over 2 reactions in the full pathway
  • CHOLINE-BETAINE-ANA-PWY, choline degradation I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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