Difference between revisions of "CYTIDEAM-RXN"

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(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase ** chalcone isomerase * ec-number: ** [http://en...")
(Created page with "Category:reaction == Reaction CYTIDEAM-RXN == * direction: ** left-to-right * common-name: ** deoxycytidine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.5...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction APIGNAR-RXN ==
+
== Reaction CYTIDEAM-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** naringenin chalcone isomerase
+
** deoxycytidine deaminase
−
** chalcone isomerase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
+
** [http://enzyme.expasy.org/EC/3.5.4.5 ec-3.5.4.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
+
* 1 [[DEOXYCYTIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DEOXYURIDINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09285]]
+
* Gene: [[SJ17454]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20427]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
+
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
+
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation:
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7397]], naringenin biosynthesis (engineered):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7897]], flavonoid di-C-glucosylation:
 
−
** '''3''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97207
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13434 13434]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02485 R02485]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11650 P11650]
+
** [http://www.uniprot.org/uniprot/P47718 P47718]
−
** [http://www.uniprot.org/uniprot/P11651 P11651]
+
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
−
** [http://www.uniprot.org/uniprot/P41088 P41088]
+
** [http://www.uniprot.org/uniprot/P47298 P47298]
−
** [http://www.uniprot.org/uniprot/P14298 P14298]
+
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
−
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
+
** [http://www.uniprot.org/uniprot/P32320 P32320]
−
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
+
** [http://www.uniprot.org/uniprot/P75051 P75051]
−
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
+
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
−
** [http://www.uniprot.org/uniprot/P28012 P28012]
+
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
−
** [http://www.uniprot.org/uniprot/P41089 P41089]
+
** [http://www.uniprot.org/uniprot/O65571 O65571]
−
** [http://www.uniprot.org/uniprot/O81980 O81980]
+
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
−
** [http://www.uniprot.org/uniprot/O22604 O22604]
+
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
−
** [http://www.uniprot.org/uniprot/O22651 O22651]
+
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
−
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
+
** [http://www.uniprot.org/uniprot/O65896 O65896]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=chalcone isomerase|naringenin chalcone isomerase}}
+
{{#set: common-name=deoxycytidine deaminase}}
−
{{#set: ec-number=ec-5.5.1.6}}
+
{{#set: ec-number=ec-3.5.4.5}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction CYTIDEAM-RXN

  • direction:
    • left-to-right
  • common-name:
    • deoxycytidine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7199, pyrimidine deoxyribonucleosides salvage:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7181, pyrimidine deoxyribonucleosides degradation:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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