Difference between revisions of "CYTIDEAM-RXN"

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(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase ** chalcone isomerase * ec-number: ** [http://en...")
(Created page with "Category:reaction == Reaction RXN-16380 == * direction: ** left-to-right * common-name: ** long-chain fatty acid-coa ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction APIGNAR-RXN ==
+
== Reaction RXN-16380 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** naringenin chalcone isomerase
+
** long-chain fatty acid-coa ligase
−
** chalcone isomerase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09285]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ03650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08691]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20427]]
+
* Gene: [[SJ08692]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13972]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
+
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7397]], naringenin biosynthesis (engineered):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7897]], flavonoid di-C-glucosylation:
 
−
** '''3''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11650 P11650]
 
−
** [http://www.uniprot.org/uniprot/P11651 P11651]
 
−
** [http://www.uniprot.org/uniprot/P41088 P41088]
 
−
** [http://www.uniprot.org/uniprot/P14298 P14298]
 
−
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
 
−
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
 
−
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
 
−
** [http://www.uniprot.org/uniprot/P28012 P28012]
 
−
** [http://www.uniprot.org/uniprot/P41089 P41089]
 
−
** [http://www.uniprot.org/uniprot/O81980 O81980]
 
−
** [http://www.uniprot.org/uniprot/O22604 O22604]
 
−
** [http://www.uniprot.org/uniprot/O22651 O22651]
 
−
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=chalcone isomerase|naringenin chalcone isomerase}}
+
{{#set: common-name=long-chain fatty acid-coa ligase}}
−
{{#set: ec-number=ec-5.5.1.6}}
+
{{#set: ec-number=ec-6.2.1.3}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:08, 5 January 2021

Reaction RXN-16380

  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5989, stearate biosynthesis II (bacteria and plants):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CYTIDEAM-RXN&oldid=64884"