Difference between revisions of "DCTP-PYROPHOSPHATASE-RXN"

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(Created page with "Category:reaction == Reaction HEMEOSYN-RXN == * direction: ** left-to-right * common-name: ** heme o biosynthesis ** protoheme ix farnesyltransferase * ec-number: ** [http...")
(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * common-name: ** phytoene synthase * synonymous: ** geranylgeranyl-diphosphate geranylgeranyltr...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HEMEOSYN-RXN ==
+
== Reaction RXNARA-8002 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** heme o biosynthesis
+
** phytoene synthase
−
** protoheme ix farnesyltransferase
+
* synonymous:
−
* ec-number:
+
** geranylgeranyl-diphosphate geranylgeranyltransferase
−
** [http://enzyme.expasy.org/EC/2.5.1.141 ec-2.5.1.141]
+
** psase
 +
** prephytoene-diphosphate synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FARNESYL-PP]][c] '''+''' 1 [[PROTOHEME]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-17063]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10781]]
+
* Gene: [[SJ02885]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7856]], heme a biosynthesis:
+
* [[PWY-5942]], trans-lycopene biosynthesis I:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6287]], neurosporene biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28071 28071]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07411 R07411]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protoheme ix farnesyltransferase|heme o biosynthesis}}
+
{{#set: common-name=phytoene synthase}}
−
{{#set: ec-number=ec-2.5.1.141}}
+
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase|prephytoene-diphosphate synthase}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 18:59, 14 January 2021

Reaction RXNARA-8002

  • direction:
    • left-to-right
  • common-name:
    • phytoene synthase
  • synonymous:
    • geranylgeranyl-diphosphate geranylgeranyltransferase
    • psase
    • prephytoene-diphosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5942, trans-lycopene biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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