Difference between revisions of "DCTP-PYROPHOSPHATASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * common-name: ** phytoene synthase * synonymous: ** geranylgeranyl-diphosphate geranylgeranyltr...")
(Created page with "Category:reaction == Reaction DCTP-PYROPHOSPHATASE-RXN == * direction: ** left-to-right * common-name: ** nucleotide diphosphatase ** dctp pyrophosphohydrolase * ec-number...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXNARA-8002 ==
+
== Reaction DCTP-PYROPHOSPHATASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phytoene synthase
+
** nucleotide diphosphatase
−
* synonymous:
+
** dctp pyrophosphohydrolase
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
+
* ec-number:
−
** psase
+
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
−
** prephytoene-diphosphate synthase
+
** [http://enzyme.expasy.org/EC/3.6.1.12 ec-3.6.1.12]
 +
** [http://enzyme.expasy.org/EC/3.6.1.65 ec-3.6.1.65]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[DCTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DCMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02885]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ08856]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19893]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07337]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04934]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08998]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12166]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19894]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06814]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
</div>
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5942]], trans-lycopene biosynthesis I:
+
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6287]], neurosporene biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97203
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22637 22637]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01668 R01668]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P39262 P39262]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phytoene synthase}}
+
{{#set: common-name=nucleotide diphosphatase|dctp pyrophosphohydrolase}}
−
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase|prephytoene-diphosphate synthase}}
+
{{#set: ec-number=ec-3.6.1.9|ec-3.6.1.12|ec-3.6.1.65}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=9}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction DCTP-PYROPHOSPHATASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DCTP-PYROPHOSPHATASE-RXN&oldid=139921"