Difference between revisions of "DISULISOM-RXN"

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(Created page with "Category:reaction == Reaction RXN66-320 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5] == Reaction formula == * 1 ZYMO...")
(Created page with "Category:reaction == Reaction CYTIDEAM-RXN == * direction: ** left-to-right * common-name: ** deoxycytidine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.5...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN66-320 ==
+
== Reaction CYTIDEAM-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** deoxycytidine deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5]
+
** [http://enzyme.expasy.org/EC/3.5.4.5 ec-3.5.4.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ZYMOSTEROL]][c] '''=>''' 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c]
+
* 1 [[DEOXYCYTIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DEOXYURIDINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ17454]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
+
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
−
** '''14''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY66-341]], cholesterol biosynthesis I:
+
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation:
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34000 34000]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13434 13434]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04804 R04804]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02485 R02485]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P47718 P47718]
 +
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
 +
** [http://www.uniprot.org/uniprot/P47298 P47298]
 +
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
 +
** [http://www.uniprot.org/uniprot/P32320 P32320]
 +
** [http://www.uniprot.org/uniprot/P75051 P75051]
 +
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
 +
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
 +
** [http://www.uniprot.org/uniprot/O65571 O65571]
 +
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
 +
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
 +
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
 +
** [http://www.uniprot.org/uniprot/O65896 O65896]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-5.3.3.5}}
+
{{#set: common-name=deoxycytidine deaminase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-3.5.4.5}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:08, 5 January 2021

Reaction CYTIDEAM-RXN

  • direction:
    • left-to-right
  • common-name:
    • deoxycytidine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7199, pyrimidine deoxyribonucleosides salvage:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7181, pyrimidine deoxyribonucleosides degradation:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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