Difference between revisions of "DISULISOM-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction CYTIDEAM-RXN == * direction: ** left-to-right * common-name: ** deoxycytidine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.5...")
(Created page with "Category:reaction == Reaction 1.2.4.4-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CYTIDEAM-RXN ==
+
== Reaction 1.2.4.4-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** deoxycytidine deaminase
+
** 3-methyl-2-oxobutanoate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.5 ec-3.5.4.5]
+
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEOXYCYTIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DEOXYURIDINE]][c]
+
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17454]]
+
* Gene: [[SJ18449]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11017]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
+
* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13434 13434]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13460 13460]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02485 R02485]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P47718 P47718]
+
** [http://www.uniprot.org/uniprot/P21839 P21839]
−
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
+
** [http://www.uniprot.org/uniprot/P21953 P21953]
−
** [http://www.uniprot.org/uniprot/P47298 P47298]
+
** [http://www.uniprot.org/uniprot/P37940 P37940]
−
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
+
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
−
** [http://www.uniprot.org/uniprot/P32320 P32320]
+
** [http://www.uniprot.org/uniprot/P37941 P37941]
−
** [http://www.uniprot.org/uniprot/P75051 P75051]
+
** [http://www.uniprot.org/uniprot/P11178 P11178]
−
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
+
** [http://www.uniprot.org/uniprot/P12694 P12694]
−
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
+
** [http://www.uniprot.org/uniprot/P09061 P09061]
−
** [http://www.uniprot.org/uniprot/O65571 O65571]
+
** [http://www.uniprot.org/uniprot/P09060 P09060]
−
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
+
** [http://www.uniprot.org/uniprot/P11960 P11960]
−
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
+
** [http://www.uniprot.org/uniprot/O84344 O84344]
−
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
+
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
−
** [http://www.uniprot.org/uniprot/O65896 O65896]
+
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P35738 P35738]
−
{{#set: common-name=deoxycytidine deaminase}}
+
** [http://www.uniprot.org/uniprot/P50136 P50136]
−
{{#set: ec-number=ec-3.5.4.5}}
+
** [http://www.uniprot.org/uniprot/O48615 O48615]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/O03849 O03849]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/O82450 O82450]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase}}
 +
{{#set: ec-number=ec-1.2.4.4}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:38, 5 January 2021

Reaction 1.2.4.4-RXN

  • direction:
    • reversible
  • common-name:
    • 3-methyl-2-oxobutanoate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5046, 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DISULISOM-RXN&oldid=77957"