Difference between revisions of "DTMPKI-RXN"

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(Created page with "Category:reaction == Reaction L-LACTATE-DEHYDROGENASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.27 ec-1.1.1.27] == Reaction form...")
(Created page with "Category:reaction == Reaction GLYRIBONUCSYN-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylamine-glycine ligase * ec-number: ** [http://enzyme.expasy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction L-LACTATE-DEHYDROGENASE-RXN ==
+
== Reaction GLYRIBONUCSYN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** phosphoribosylamine-glycine ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.27 ec-1.1.1.27]
+
** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-LACTATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03192]]
+
* Gene: [[SJ06408]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P122-PWY]], heterolactic fermentation:
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[P124-PWY]], Bifidobacterium shunt:
+
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5481]], pyruvate fermentation to (S)-lactate:
+
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23447 23447]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00703 R00703]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P04034 P04034]
+
** [http://www.uniprot.org/uniprot/P07244 P07244]
−
** [http://www.uniprot.org/uniprot/P04642 P04642]
+
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
−
** [http://www.uniprot.org/uniprot/P06150 P06150]
+
** [http://www.uniprot.org/uniprot/P12039 P12039]
−
** [http://www.uniprot.org/uniprot/P20373 P20373]
+
** [http://www.uniprot.org/uniprot/P21872 P21872]
−
** [http://www.uniprot.org/uniprot/P13491 P13491]
+
** [http://www.uniprot.org/uniprot/P15640 P15640]
−
** [http://www.uniprot.org/uniprot/P22988 P22988]
+
** [http://www.uniprot.org/uniprot/P00967 P00967]
−
** [http://www.uniprot.org/uniprot/P56512 P56512]
+
** [http://www.uniprot.org/uniprot/P16340 P16340]
−
** [http://www.uniprot.org/uniprot/Q7M1E1 Q7M1E1]
+
** [http://www.uniprot.org/uniprot/P22102 P22102]
−
** [http://www.uniprot.org/uniprot/P33571 P33571]
+
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
−
** [http://www.uniprot.org/uniprot/P13743 P13743]
+
** [http://www.uniprot.org/uniprot/P43845 P43845]
−
** [http://www.uniprot.org/uniprot/P26283 P26283]
+
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
−
** [http://www.uniprot.org/uniprot/Q01462 Q01462]
+
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
−
** [http://www.uniprot.org/uniprot/Q06176 Q06176]
+
** [http://www.uniprot.org/uniprot/P20772 P20772]
−
** [http://www.uniprot.org/uniprot/Q9PNC8 Q9PNC8]
+
** [http://www.uniprot.org/uniprot/P26977 P26977]
−
** [http://www.uniprot.org/uniprot/Q59244 Q59244]
+
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
−
** [http://www.uniprot.org/uniprot/P13490 P13490]
+
** [http://www.uniprot.org/uniprot/P74232 P74232]
−
** [http://www.uniprot.org/uniprot/P22989 P22989]
+
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
−
** [http://www.uniprot.org/uniprot/P56511 P56511]
+
** [http://www.uniprot.org/uniprot/P52421 P52421]
−
** [http://www.uniprot.org/uniprot/Q60176 Q60176]
 
−
** [http://www.uniprot.org/uniprot/P33232 P33232]
 
−
** [http://www.uniprot.org/uniprot/P00344 P00344]
 
−
** [http://www.uniprot.org/uniprot/P00345 P00345]
 
−
** [http://www.uniprot.org/uniprot/P00337 P00337]
 
−
** [http://www.uniprot.org/uniprot/P00340 P00340]
 
−
** [http://www.uniprot.org/uniprot/P00341 P00341]
 
−
** [http://www.uniprot.org/uniprot/P07864 P07864]
 
−
** [http://www.uniprot.org/uniprot/P07195 P07195]
 
−
** [http://www.uniprot.org/uniprot/P00338 P00338]
 
−
** [http://www.uniprot.org/uniprot/P00343 P00343]
 
−
** [http://www.uniprot.org/uniprot/P00342 P00342]
 
−
** [http://www.uniprot.org/uniprot/P06151 P06151]
 
−
** [http://www.uniprot.org/uniprot/P00336 P00336]
 
−
** [http://www.uniprot.org/uniprot/P00339 P00339]
 
−
** [http://www.uniprot.org/uniprot/P13714 P13714]
 
−
** [http://www.uniprot.org/uniprot/P50933 P50933]
 
−
** [http://www.uniprot.org/uniprot/O23569 O23569]
 
−
** [http://www.uniprot.org/uniprot/P47698 P47698]
 
−
** [http://www.uniprot.org/uniprot/Q9CII4 Q9CII4]
 
−
** [http://www.uniprot.org/uniprot/Q9CGG8 Q9CGG8]
 
−
** [http://www.uniprot.org/uniprot/Q07251 Q07251]
 
−
** [http://www.uniprot.org/uniprot/Q62545 Q62545]
 
−
** [http://www.uniprot.org/uniprot/P42121 P42121]
 
−
** [http://www.uniprot.org/uniprot/P42119 P42119]
 
−
** [http://www.uniprot.org/uniprot/P42120 P42120]
 
−
** [http://www.uniprot.org/uniprot/P42123 P42123]
 
−
** [http://www.uniprot.org/uniprot/P19629 P19629]
 
−
** [http://www.uniprot.org/uniprot/Q60009 Q60009]
 
−
** [http://www.uniprot.org/uniprot/Q27888 Q27888]
 
−
** [http://www.uniprot.org/uniprot/P19869 P19869]
 
−
** [http://www.uniprot.org/uniprot/P19858 P19858]
 
−
** [http://www.uniprot.org/uniprot/P13715 P13715]
 
−
** [http://www.uniprot.org/uniprot/P10655 P10655]
 
−
** [http://www.uniprot.org/uniprot/P14561 P14561]
 
−
** [http://www.uniprot.org/uniprot/P20619 P20619]
 
−
** [http://www.uniprot.org/uniprot/P16125 P16125]
 
−
** [http://www.uniprot.org/uniprot/P29038 P29038]
 
−
** [http://www.uniprot.org/uniprot/P0C0J3 P0C0J3]
 
−
** [http://www.uniprot.org/uniprot/P16115 P16115]
 
−
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 
−
** [http://www.uniprot.org/uniprot/Q9ZRJ5 Q9ZRJ5]
 
−
** [http://www.uniprot.org/uniprot/O81272 O81272]
 
−
** [http://www.uniprot.org/uniprot/Q9SBE4 Q9SBE4]
 
−
** [http://www.uniprot.org/uniprot/Q96569 Q96569]
 
−
** [http://www.uniprot.org/uniprot/Q96570 Q96570]
 
−
** [http://www.uniprot.org/uniprot/P46454 P46454]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.1.1.27}}
+
{{#set: common-name=phosphoribosylamine-glycine ligase}}
 +
{{#set: ec-number=ec-6.3.4.13}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:06, 14 January 2021

Reaction GLYRIBONUCSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoribosylamine-glycine ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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