Difference between revisions of "DTMPKI-RXN"

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(Created page with "Category:reaction == Reaction 3.4.22.1-RXN == * direction: ** left-to-right * common-name: ** cathepsin b * ec-number: ** [http://enzyme.expasy.org/EC/3.4.22.1 ec-3.4.22.1...")
(Created page with "Category:reaction == Reaction DTMPKI-RXN == * direction: ** left-to-right * common-name: ** dtmp kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.22.1-RXN ==
+
== Reaction DTMPKI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** cathepsin b
+
** dtmp kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.22.1 ec-3.4.22.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 +
** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13517]]
+
* Gene: [[SJ01455]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 +
** '''14''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97804
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07688 P07688]
+
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
−
** [http://www.uniprot.org/uniprot/P07858 P07858]
+
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
−
** [http://www.uniprot.org/uniprot/P10605 P10605]
+
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
−
** [http://www.uniprot.org/uniprot/P00787 P00787]
+
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
−
** [http://www.uniprot.org/uniprot/P43157 P43157]
+
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
−
** [http://www.uniprot.org/uniprot/P43233 P43233]
+
** [http://www.uniprot.org/uniprot/P33803 P33803]
−
** [http://www.uniprot.org/uniprot/Q20950 Q20950]
+
** [http://www.uniprot.org/uniprot/P42490 P42490]
−
** [http://www.uniprot.org/uniprot/P43510 P43510]
+
** [http://www.uniprot.org/uniprot/P00572 P00572]
−
** [http://www.uniprot.org/uniprot/P43509 P43509]
+
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
−
** [http://www.uniprot.org/uniprot/P43508 P43508]
+
** [http://www.uniprot.org/uniprot/P68693 P68693]
−
** [http://www.uniprot.org/uniprot/P43507 P43507]
+
** [http://www.uniprot.org/uniprot/P23919 P23919]
 +
** [http://www.uniprot.org/uniprot/P36590 P36590]
 +
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
 +
** [http://www.uniprot.org/uniprot/O81650 O81650]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=cathepsin b}}
+
{{#set: common-name=dtmp kinase}}
−
{{#set: ec-number=ec-3.4.22.1}}
+
{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.13|ec-2.7.4.9}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction DTMPKI-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 14 reactions found over 13 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DTMPKI-RXN&oldid=142782"