Difference between revisions of "DTMPKI-RXN"

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(Created page with "Category:reaction == Reaction 3.4.22.1-RXN == * direction: ** left-to-right * common-name: ** cathepsin b * ec-number: ** [http://enzyme.expasy.org/EC/3.4.22.1 ec-3.4.22.1...")
(Created page with "Category:reaction == Reaction L-LACTATE-DEHYDROGENASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.27 ec-1.1.1.27] == Reaction form...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 3.4.22.1-RXN ==
+
== Reaction L-LACTATE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** cathepsin b
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.4.22.1 ec-3.4.22.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.27 ec-1.1.1.27]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
+
* 1 [[L-LACTATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ13517]]
+
* Gene: [[SJ03192]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt:
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5481]], pyruvate fermentation to (S)-lactate:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23447 23447]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00703 R00703]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/P07688 P07688]
+
** [http://www.uniprot.org/uniprot/P04034 P04034]
** [http://www.uniprot.org/uniprot/P07858 P07858]
+
** [http://www.uniprot.org/uniprot/P04642 P04642]
** [http://www.uniprot.org/uniprot/P10605 P10605]
+
** [http://www.uniprot.org/uniprot/P06150 P06150]
** [http://www.uniprot.org/uniprot/P00787 P00787]
+
** [http://www.uniprot.org/uniprot/P20373 P20373]
** [http://www.uniprot.org/uniprot/P43157 P43157]
+
** [http://www.uniprot.org/uniprot/P13491 P13491]
** [http://www.uniprot.org/uniprot/P43233 P43233]
+
** [http://www.uniprot.org/uniprot/P22988 P22988]
** [http://www.uniprot.org/uniprot/Q20950 Q20950]
+
** [http://www.uniprot.org/uniprot/P56512 P56512]
** [http://www.uniprot.org/uniprot/P43510 P43510]
+
** [http://www.uniprot.org/uniprot/Q7M1E1 Q7M1E1]
** [http://www.uniprot.org/uniprot/P43509 P43509]
+
** [http://www.uniprot.org/uniprot/P33571 P33571]
** [http://www.uniprot.org/uniprot/P43508 P43508]
+
** [http://www.uniprot.org/uniprot/P13743 P13743]
** [http://www.uniprot.org/uniprot/P43507 P43507]
+
** [http://www.uniprot.org/uniprot/P26283 P26283]
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q01462 Q01462]
{{#set: common-name=cathepsin b}}
+
** [http://www.uniprot.org/uniprot/Q06176 Q06176]
{{#set: ec-number=ec-3.4.22.1}}
+
** [http://www.uniprot.org/uniprot/Q9PNC8 Q9PNC8]
 +
** [http://www.uniprot.org/uniprot/Q59244 Q59244]
 +
** [http://www.uniprot.org/uniprot/P13490 P13490]
 +
** [http://www.uniprot.org/uniprot/P22989 P22989]
 +
** [http://www.uniprot.org/uniprot/P56511 P56511]
 +
** [http://www.uniprot.org/uniprot/Q60176 Q60176]
 +
** [http://www.uniprot.org/uniprot/P33232 P33232]
 +
** [http://www.uniprot.org/uniprot/P00344 P00344]
 +
** [http://www.uniprot.org/uniprot/P00345 P00345]
 +
** [http://www.uniprot.org/uniprot/P00337 P00337]
 +
** [http://www.uniprot.org/uniprot/P00340 P00340]
 +
** [http://www.uniprot.org/uniprot/P00341 P00341]
 +
** [http://www.uniprot.org/uniprot/P07864 P07864]
 +
** [http://www.uniprot.org/uniprot/P07195 P07195]
 +
** [http://www.uniprot.org/uniprot/P00338 P00338]
 +
** [http://www.uniprot.org/uniprot/P00343 P00343]
 +
** [http://www.uniprot.org/uniprot/P00342 P00342]
 +
** [http://www.uniprot.org/uniprot/P06151 P06151]
 +
** [http://www.uniprot.org/uniprot/P00336 P00336]
 +
** [http://www.uniprot.org/uniprot/P00339 P00339]
 +
** [http://www.uniprot.org/uniprot/P13714 P13714]
 +
** [http://www.uniprot.org/uniprot/P50933 P50933]
 +
** [http://www.uniprot.org/uniprot/O23569 O23569]
 +
** [http://www.uniprot.org/uniprot/P47698 P47698]
 +
** [http://www.uniprot.org/uniprot/Q9CII4 Q9CII4]
 +
** [http://www.uniprot.org/uniprot/Q9CGG8 Q9CGG8]
 +
** [http://www.uniprot.org/uniprot/Q07251 Q07251]
 +
** [http://www.uniprot.org/uniprot/Q62545 Q62545]
 +
** [http://www.uniprot.org/uniprot/P42121 P42121]
 +
** [http://www.uniprot.org/uniprot/P42119 P42119]
 +
** [http://www.uniprot.org/uniprot/P42120 P42120]
 +
** [http://www.uniprot.org/uniprot/P42123 P42123]
 +
** [http://www.uniprot.org/uniprot/P19629 P19629]
 +
** [http://www.uniprot.org/uniprot/Q60009 Q60009]
 +
** [http://www.uniprot.org/uniprot/Q27888 Q27888]
 +
** [http://www.uniprot.org/uniprot/P19869 P19869]
 +
** [http://www.uniprot.org/uniprot/P19858 P19858]
 +
** [http://www.uniprot.org/uniprot/P13715 P13715]
 +
** [http://www.uniprot.org/uniprot/P10655 P10655]
 +
** [http://www.uniprot.org/uniprot/P14561 P14561]
 +
** [http://www.uniprot.org/uniprot/P20619 P20619]
 +
** [http://www.uniprot.org/uniprot/P16125 P16125]
 +
** [http://www.uniprot.org/uniprot/P29038 P29038]
 +
** [http://www.uniprot.org/uniprot/P0C0J3 P0C0J3]
 +
** [http://www.uniprot.org/uniprot/P16115 P16115]
 +
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 +
** [http://www.uniprot.org/uniprot/Q9ZRJ5 Q9ZRJ5]
 +
** [http://www.uniprot.org/uniprot/O81272 O81272]
 +
** [http://www.uniprot.org/uniprot/Q9SBE4 Q9SBE4]
 +
** [http://www.uniprot.org/uniprot/Q96569 Q96569]
 +
** [http://www.uniprot.org/uniprot/Q96570 Q96570]
 +
** [http://www.uniprot.org/uniprot/P46454 P46454]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: ec-number=ec-1.1.1.27}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction L-LACTATE-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-5481, pyruvate fermentation to (S)-lactate:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway

Reconstruction information

External links