Difference between revisions of "DUTP-PYROP-RXN"

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(Created page with "Category:reaction == Reaction ITUP == * direction: ** left-to-right * common-name: ** itp:uridine 5'-phosphotransferase == Reaction formula == * 1.0 ITP[c] '''+''' 1.0...")
(Created page with "Category:reaction == Reaction DUTP-PYROP-RXN == * direction: ** left-to-right * common-name: ** nucleotide diphosphatase ** deoxyuridine triphosphatase * ec-number: ** [ht...")
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ITUP ==
+
== Reaction DUTP-PYROP-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** itp:uridine 5'-phosphotransferase
+
** nucleotide diphosphatase
 +
** deoxyuridine triphosphatase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23]
 +
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ITP]][c] '''+''' 1.0 [[URIDINE]][c] '''=>''' 1.0 [[IDP]][c] '''+''' 1.0 [[PROTON]][c] '''+''' 1.0 [[UMP]][c]
+
* 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02034]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ04934]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08998]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07337]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12893]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08856]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19894]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15690]]
+
* Gene: [[SJ19893]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12166]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 +
** '''14''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97822
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
 +
** [http://www.uniprot.org/uniprot/P33316 P33316]
 +
** [http://www.uniprot.org/uniprot/O15923 O15923]
 +
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
 +
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 +
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 +
** [http://www.uniprot.org/uniprot/P43792 P43792]
 +
** [http://www.uniprot.org/uniprot/P32518 P32518]
 +
** [http://www.uniprot.org/uniprot/P68635 P68635]
 +
** [http://www.uniprot.org/uniprot/P68634 P68634]
 +
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 +
** [http://www.uniprot.org/uniprot/P03195 P03195]
 +
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 +
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 +
** [http://www.uniprot.org/uniprot/P33317 P33317]
 +
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 +
** [http://www.uniprot.org/uniprot/P43058 P43058]
 +
** [http://www.uniprot.org/uniprot/O80091 O80091]
 +
** [http://www.uniprot.org/uniprot/O36404 O36404]
 +
** [http://www.uniprot.org/uniprot/O41033 O41033]
 +
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 +
** [http://www.uniprot.org/uniprot/O39251 O39251]
 +
** [http://www.uniprot.org/uniprot/O01934 O01934]
 +
** [http://www.uniprot.org/uniprot/P10234 P10234]
 +
** [http://www.uniprot.org/uniprot/P06968 P06968]
 +
** [http://www.uniprot.org/uniprot/P09254 P09254]
 +
** [http://www.uniprot.org/uniprot/P28892 P28892]
 +
** [http://www.uniprot.org/uniprot/P28893 P28893]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=itp:uridine 5'-phosphotransferase}}
+
{{#set: common-name=deoxyuridine triphosphatase|nucleotide diphosphatase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-3.6.1.9|ec-3.6.1.23}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=9}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction DUTP-PYROP-RXN

  • direction:
    • left-to-right
  • common-name:
    • nucleotide diphosphatase
    • deoxyuridine triphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 14 reactions found over 13 reactions in the full pathway
  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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