Difference between revisions of "GALACTOKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN-12729 == * direction: ** left-to-right * common-name: ** β l-selenocystathionase * ec-number: ** [http://enzyme.expasy.org/EC/4.4.1....")
(Created page with "Category:reaction == Reaction RXN66-320 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5] == Reaction formula == * 1 ZYMO...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-12729 ==
+
== Reaction RXN66-320 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** β l-selenocystathionase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.4.1.8 ec-4.4.1.8]
+
** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-13717]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[SELENOHOMOCYSTEINE]][c]
+
* 1 [[ZYMOSTEROL]][c] '''=>''' 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ20949]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6936]], seleno-amino acid biosynthesis (plants):
+
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''14''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY66-341]], cholesterol biosynthesis I:
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34000 34000]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04804 R04804]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=β l-selenocystathionase}}
+
{{#set: ec-number=ec-5.3.3.5}}
{{#set: ec-number=ec-4.4.1.8}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=2}}
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 11:28, 15 January 2021

Reaction RXN66-320

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-4, cholesterol biosynthesis III (via desmosterol):
    • 14 reactions found over 4 reactions in the full pathway
  • PWY66-341, cholesterol biosynthesis I:
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links