Difference between revisions of "GALACTOKIN-RXN"

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(Created page with "Category:reaction == Reaction METHIONYL-TRNA-FORMYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** 10-formyltetrahydrofolate:l-methionyl-trnafmet n-form...")
(Created page with "Category:reaction == Reaction GALACTOKIN-RXN == * direction: ** reversible * common-name: ** galactokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHIONYL-TRNA-FORMYLTRANSFERASE-RXN ==
+
== Reaction GALACTOKIN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 10-formyltetrahydrofolate:l-methionyl-trnafmet n-formyltransferase
+
** galactokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.9 ec-2.1.2.9]
+
** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c] '''=>''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18164]]
+
* Gene: [[SJ19552]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13010]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17935]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6527]], stachyose degradation:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-422]]:
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose detoxification:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR99985
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24381 24381]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13556 13556]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P94463 P94463]
+
** [http://www.uniprot.org/uniprot/P09608 P09608]
−
** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
+
** [http://www.uniprot.org/uniprot/Q01415 Q01415]
−
** [http://www.uniprot.org/uniprot/P50932 P50932]
+
** [http://www.uniprot.org/uniprot/P22713 P22713]
−
** [http://www.uniprot.org/uniprot/P47605 P47605]
+
** [http://www.uniprot.org/uniprot/P31767 P31767]
−
** [http://www.uniprot.org/uniprot/P44787 P44787]
+
** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
−
** [http://www.uniprot.org/uniprot/P56461 P56461]
+
** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
−
** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
+
** [http://www.uniprot.org/uniprot/P96993 P96993]
−
** [http://www.uniprot.org/uniprot/O51091 O51091]
+
** [http://www.uniprot.org/uniprot/P04385 P04385]
−
** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
+
** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
−
** [http://www.uniprot.org/uniprot/P23882 P23882]
+
** [http://www.uniprot.org/uniprot/P13227 P13227]
−
** [http://www.uniprot.org/uniprot/P32785 P32785]
+
** [http://www.uniprot.org/uniprot/P39574 P39574]
−
** [http://www.uniprot.org/uniprot/P75235 P75235]
+
** [http://www.uniprot.org/uniprot/P13045 P13045]
−
** [http://www.uniprot.org/uniprot/Q55163 Q55163]
+
** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=10-formyltetrahydrofolate:l-methionyl-trnafmet n-formyltransferase}}
+
{{#set: common-name=galactokinase}}
−
{{#set: ec-number=ec-2.1.2.9}}
+
{{#set: ec-number=ec-2.7.1.6}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction GALACTOKIN-RXN

  • direction:
    • reversible
  • common-name:
    • galactokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6527, stachyose degradation:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-422:
    • 5 reactions found over n.a reactions in the full pathway
  • PWY-3821, D-galactose detoxification:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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