Difference between revisions of "GALACTOKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN66-320 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5] == Reaction formula == * 1 ZYMO...")
(Created page with "Category:reaction == Reaction GALACTOKIN-RXN == * direction: ** reversible * common-name: ** galactokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN66-320 ==
+
== Reaction GALACTOKIN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** galactokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5]
+
** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ZYMOSTEROL]][c] '''=>''' 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c]
+
* 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ19552]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13010]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17935]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
+
* [[PWY-6527]], stachyose degradation:
−
** '''14''' reactions found over '''4''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY66-341]], cholesterol biosynthesis I:
+
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-422]]:
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose detoxification:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR99985
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34000 34000]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13556 13556]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04804 R04804]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: ec-number=ec-5.3.3.5}}
+
** [http://www.uniprot.org/uniprot/P09608 P09608]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/Q01415 Q01415]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/P22713 P22713]
−
{{#set: reconstruction category=gap-filling}}
+
** [http://www.uniprot.org/uniprot/P31767 P31767]
−
{{#set: reconstruction tool=meneco}}
+
** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
** [http://www.uniprot.org/uniprot/P96993 P96993]
 +
** [http://www.uniprot.org/uniprot/P04385 P04385]
 +
** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
 +
** [http://www.uniprot.org/uniprot/P13227 P13227]
 +
** [http://www.uniprot.org/uniprot/P39574 P39574]
 +
** [http://www.uniprot.org/uniprot/P13045 P13045]
 +
** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=galactokinase}}
 +
{{#set: ec-number=ec-2.7.1.6}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction GALACTOKIN-RXN

  • direction:
    • reversible
  • common-name:
    • galactokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6527, stachyose degradation:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-422:
    • 5 reactions found over n.a reactions in the full pathway
  • PWY-3821, D-galactose detoxification:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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