Difference between revisions of "GALACTOKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN66-320 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5] == Reaction formula == * 1 ZYMO...")
(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN == * direction: ** reversible * common-name: ** leucine transaminase * ec-number: ** [http://enzyme.expasy...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN66-320 ==
+
== Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** leucine transaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5]
+
** [http://enzyme.expasy.org/EC/2.6.1.6 ec-2.6.1.6]
 +
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ZYMOSTEROL]][c] '''=>''' 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LEU]][c] '''<=>''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[GLT]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ06412]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04586]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17677]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
+
* [[LEU-DEG2-PWY]], L-leucine degradation I:
−
** '''14''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY66-341]], cholesterol biosynthesis I:
+
* [[PWY-5076]], L-leucine degradation III:
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7767]], L-leucine degradation IV (Stickland reaction):
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[LEUSYN-PWY]], L-leucine biosynthesis:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34000 34000]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18324 18324]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04804 R04804]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01090 R01090]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: ec-number=ec-5.3.3.5}}
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/P38891 P38891]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/P47176 P47176]
−
{{#set: reconstruction category=gap-filling}}
+
** [http://www.uniprot.org/uniprot/O86505 O86505]
−
{{#set: reconstruction tool=meneco}}
+
** [http://www.uniprot.org/uniprot/O14370 O14370]
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://www.uniprot.org/uniprot/O32954 O32954]
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=leucine transaminase}}
 +
{{#set: ec-number=ec-2.6.1.6|ec-2.6.1.42}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LEU-DEG2-PWY, L-leucine degradation I:
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5076, L-leucine degradation III:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7767, L-leucine degradation IV (Stickland reaction):
    • 1 reactions found over 5 reactions in the full pathway
  • LEUSYN-PWY, L-leucine biosynthesis:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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