Difference between revisions of "GTP-CYCLOHYDRO-II-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5168 PWY-5168] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-58024 tax-5...")
(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-II-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase ** gtp cyclohydrolase ii * ec-number: ** [http://...")
 
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5168 PWY-5168] ==
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== Reaction GTP-CYCLOHYDRO-II-RXN ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-58024 tax-58024]
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** left-to-right
 
* common-name:
 
* common-name:
** ferulate and sinapate biosynthesis
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** gtp cyclohydrolase
== Reaction(s) found ==
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** gtp cyclohydrolase ii
* [[RXN-1143]]
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* ec-number:
* [[RXN-8014]]
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** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25]
== Reaction(s) not found ==
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== Reaction formula ==
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1241 RXN-1241]
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* 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1142 RXN-1142]
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== Gene(s) associated with this reaction  ==
{{#set: taxonomic-range=tax-58024}}
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* Gene: [[SJ17329]]
{{#set: common-name=ferulate and sinapate biosynthesis}}
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** Category: [[annotation]]
{{#set: nb reaction found=2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
{{#set: completion rate=0.5}}
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* Gene: [[SJ05001]]
{{#set: nb total reaction=4}}
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) ==
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6168]], flavin biosynthesis III (fungi):
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR100455
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23705 23705]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
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** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
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** [http://www.uniprot.org/uniprot/O08315 O08315]
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** [http://www.uniprot.org/uniprot/O66679 O66679]
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** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
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** [http://www.uniprot.org/uniprot/O25484 O25484]
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** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
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** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
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** [http://www.uniprot.org/uniprot/P43525 P43525]
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** [http://www.uniprot.org/uniprot/P17620 P17620]
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** [http://www.uniprot.org/uniprot/P38066 P38066]
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** [http://www.uniprot.org/uniprot/P50139 P50139]
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** [http://www.uniprot.org/uniprot/P74104 P74104]
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** [http://www.uniprot.org/uniprot/O24019 O24019]
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** [http://www.uniprot.org/uniprot/P51695 P51695]
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** [http://www.uniprot.org/uniprot/P50855 P50855]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=gtp cyclohydrolase|gtp cyclohydrolase ii}}
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{{#set: ec-number=ec-3.5.4.25}}
 +
{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction GTP-CYCLOHYDRO-II-RXN

  • direction:
    • left-to-right
  • common-name:
    • gtp cyclohydrolase
    • gtp cyclohydrolase ii
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links