Difference between revisions of "HBCHL"

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(Created page with "Category:reaction == Reaction RXN-9655 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** 3-hydroxydecanoyl-[acp] dehydrase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction RXN-4315-CPD-4207/WATER//CPD-10330/CPD-4209.35. == * direction: ** reversible == Reaction formula == * 1.0 CPD-4207[c] '''+''' 1.0 WATE...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-9655 ==
+
== Reaction RXN-4315-CPD-4207/WATER//CPD-10330/CPD-4209.35. ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** fatty acid synthase
 
** 3-hydroxydecanoyl-[acp] dehydrase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
* synonymous:
 
** β-hydroxyacyl-acyl carrier protein dehydratase
 
** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
** hddase
 
** faba
 
** β-hydroxyacyl-acp dehydrase
 
** β-hydroxydecanoate dehydrase
 
** β-hydroxydecanoyl thiol ester dehydrase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1.0 [[CPD-4207]][c] '''+''' 1.0 [[WATER]][c] '''<=>''' 1.0 [[CPD-10330]][c] '''+''' 1.0 [[CPD-4209]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[SJ19629]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ06616]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ10624]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ11672]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ15983]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ06944]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ17743]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ03883]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ06617]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ04769]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ00613]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ00320]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ13014]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ04443]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ10275]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I:
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
 
** '''31''' reactions found over '''31''' reactions in the full pathway
 
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
 
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[previous_meneco]]; tool: [[curation]]; comment: reaction added with meneco (previous version)
 
== External links  ==
 
== External links  ==
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
{{#set: common-name=fatty acid synthase|3-hydroxydecanoyl-[acp] dehydrase}}
+
{{#set: nb gene associated=0}}
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.86|ec-2.3.1.85}}
+
{{#set: nb pathway associated=0}}
{{#set: synonymous=&beta;-hydroxyacyl-acp dehydrase|&beta;-hydroxyacyl-acyl carrier protein dehydratase|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|hddase|faba|&beta;-hydroxydecanoate dehydrase|&beta;-hydroxydecanoyl thiol ester dehydrase}}
+
{{#set: reconstruction category=manual}}
{{#set: nb gene associated=16}}
+
{{#set: reconstruction tool=curation}}
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction comment=reaction added with meneco (previous version)}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=previous_meneco}}
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 15:36, 5 January 2021

Reaction RXN-4315-CPD-4207/WATER//CPD-10330/CPD-4209.35.

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links