Difference between revisions of "HBCHL"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] ** [http://m...")
(Created page with "Category:reaction == Reaction RXN-9655 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** 3-hydroxydecanoyl-[acp] dehydrase * ec-number: ** [http://...")
Line 1: Line 1:
−
[[Category:pathway]]
+
[[Category:reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] ==
+
== Reaction RXN-9655 ==
−
* taxonomic-range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
+
** left-to-right
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
 
 
* common-name:
 
* common-name:
−
** tca cycle i (prokaryotic)
+
** fatty acid synthase
−
== Reaction(s) found ==
+
** 3-hydroxydecanoyl-[acp] dehydrase
−
* [[2OXOGLUTARATEDEH-RXN]]
+
* ec-number:
−
* [[ACONITATEDEHYDR-RXN]]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
−
* [[ACONITATEHYDR-RXN]]
+
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
−
* [[CITSYN-RXN]]
+
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
−
* [[FUMHYDR-RXN]]
+
* synonymous:
−
* [[ISOCITDEH-RXN]]
+
** faba
−
* [[MALATE-DEH-RXN]]
+
** hddase
−
* [[RXN-14971]]
+
** β-hydroxydecanoate dehydrase
−
* [[SUCCCOASYN-RXN]]
+
** β-hydroxyacyl-acp dehydrase
−
== Reaction(s) not found ==
+
** β-hydroxyacyl-acyl carrier protein dehydratase
−
* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
+
** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
−
{{#set: taxonomic-range=tax-2157|tax-2}}
+
** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
−
{{#set: common-name=tca cycle i (prokaryotic)}}
+
** β-hydroxydecanoyl thiol ester dehydrase
−
{{#set: nb reaction found=9}}
+
== Reaction formula ==
−
{{#set: completion rate=0.9}}
+
* 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
−
{{#set: nb total reaction=10}}
+
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 +
== Pathway(s) ==
 +
* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=3-hydroxydecanoyl-[acp] dehydrase|fatty acid synthase}}
 +
{{#set: ec-number=ec-2.3.1.86|ec-2.3.1.85|ec-4.2.1.59}}
 +
{{#set: synonymous=&beta;-hydroxyacyl-acp dehydrase|&beta;-hydroxydecanoate dehydrase|faba|&beta;-hydroxyacyl-acyl carrier protein dehydratase|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|hddase|&beta;-hydroxydecanoyl thiol ester dehydrase|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
 +
{{#set: nb gene associated=16}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:44, 18 December 2020

Reaction RXN-9655

  • direction:
    • left-to-right
  • common-name:
    • fatty acid synthase
    • 3-hydroxydecanoyl-[acp] dehydrase
  • ec-number:
  • synonymous:
    • faba
    • hddase
    • β-hydroxydecanoate dehydrase
    • β-hydroxyacyl-acp dehydrase
    • β-hydroxyacyl-acyl carrier protein dehydratase
    • d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
    • (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
    • β-hydroxydecanoyl thiol ester dehydrase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-862, (5Z)-dodecenoate biosynthesis I:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (animals and fungi, cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "3-hydroxydecanoyl-[acp] dehydrase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=HBCHL&oldid=51133"