Difference between revisions of "HICH"

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(Created page with "Category:reaction == Reaction RXN-10655 == * direction: ** left-to-right * common-name: ** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph) ** 3-oxo-cis-δ7-tetrade...")
(Created page with "Category:reaction == Reaction POLYNUCLEOTIDE-5-PHOSPHATASE-RXN == * direction: ** left-to-right * common-name: ** polynucleotide 5'-phosphatase * ec-number: ** [http://enz...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-10655 ==
+
== Reaction POLYNUCLEOTIDE-5-PHOSPHATASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
+
** polynucleotide 5'-phosphatase
** 3-oxo-cis-δ7-tetradecenoyl-[acp] reductase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/3.1.3.33 ec-3.1.3.33]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[3-oxo-cis-D7-tetradecenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-hydroxy-cis-D7-tetraecenoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[5-ppp-Pur-mRNA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-8630]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ04229]]
+
* Gene: [[SJ05217]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ17743]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* Gene: [[SJ13014]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate):
+
* [[PWY-7375]], mRNA capping I:
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02249 R02249]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] reductase (nadph)|3-oxo-cis-δ7-tetradecenoyl-[acp] reductase}}
+
{{#set: common-name=polynucleotide 5'-phosphatase}}
{{#set: ec-number=ec-1.1.1.100}}
+
{{#set: ec-number=ec-3.1.3.33}}
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:05, 14 January 2021

Reaction POLYNUCLEOTIDE-5-PHOSPHATASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • polynucleotide 5'-phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7375, mRNA capping I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links