Difference between revisions of "HICH"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-12379 == * direction: ** left-to-right * common-name: ** trna (n2-methylguanine26-n2-methyltransferase * ec-number: ** [http://enzyme.exp...") |
(Created page with "Category:reaction == Reaction 2.1.1.113-RXN == * direction: ** left-to-right * common-name: ** site-specific dna-methyltransferase (cytosine-n4-specific) * ec-number: ** [...") |
||
| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction 2.1.1.113-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** site-specific dna-methyltransferase (cytosine-n4-specific) |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/2.1.1. | + | ** [http://enzyme.expasy.org/EC/2.1.1.113 ec-2.1.1.113] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DNA-N4-Methylcytosine]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ01551]] |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ10173]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ09110]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | *** Source: [[ | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R03003 R03003] | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/Q04845 Q04845] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=site-specific dna-methyltransferase (cytosine-n4-specific)}} |
| − | {{#set: ec-number=ec-2.1.1. | + | {{#set: ec-number=ec-2.1.1.113}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:05, 5 January 2021
Contents
Reaction 2.1.1.113-RXN
- direction:
- left-to-right
- common-name:
- site-specific dna-methyltransferase (cytosine-n4-specific)
- ec-number:
Reaction formula
- 1 DNA-Cytosines[c] + 1 S-ADENOSYLMETHIONINE[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 DNA-N4-Methylcytosine[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ01551
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ10173
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ09110
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
