Difference between revisions of "HICH"

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(Created page with "Category:reaction == Reaction 2.1.1.113-RXN == * direction: ** left-to-right * common-name: ** site-specific dna-methyltransferase (cytosine-n4-specific) * ec-number: ** [...")
(Created page with "Category:reaction == Reaction 4OH2OXOGLUTARALDOL-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/4.1.3.16 ec-4.1.3.16] == Reaction formula =...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 2.1.1.113-RXN ==
+
== Reaction 4OH2OXOGLUTARALDOL-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** site-specific dna-methyltransferase (cytosine-n4-specific)
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.1.1.113 ec-2.1.1.113]
+
** [http://enzyme.expasy.org/EC/4.1.3.16 ec-4.1.3.16]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DNA-N4-Methylcytosine]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-15015]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ01551]]
+
* Gene: [[SJ03464]]
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ10173]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ09110]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[HYDROXYPRODEG-PWY]], trans-4-hydroxy-L-proline degradation I:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18172 18172]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R03003 R03003]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00470 R00470]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/Q04845 Q04845]
+
** [http://www.uniprot.org/uniprot/P44480 P44480]
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
{{#set: common-name=site-specific dna-methyltransferase (cytosine-n4-specific)}}
+
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
{{#set: ec-number=ec-2.1.1.113}}
+
** [http://www.uniprot.org/uniprot/O25729 O25729]
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/O83578 O83578]
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/P50846 P50846]
 +
** [http://www.uniprot.org/uniprot/P38448 P38448]
 +
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 +
** [http://www.uniprot.org/uniprot/P94802 P94802]
 +
{{#set: direction=reversible}}
 +
{{#set: ec-number=ec-4.1.3.16}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:36, 5 January 2021

Reaction 4OH2OXOGLUTARALDOL-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HYDROXYPRODEG-PWY, trans-4-hydroxy-L-proline degradation I:
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links