Difference between revisions of "HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN"

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(Created page with "Category:reaction == Reaction NUCLEOSIDE-DIP-KIN-RXN == * direction: ** left-to-right * common-name: ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction RXN-16393 == * direction: ** left-to-right * common-name: ** long-chain fatty acid-coa ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NUCLEOSIDE-DIP-KIN-RXN ==
+
== Reaction RXN-16393 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nucleoside diphosphate kinase
+
** long-chain fatty acid-coa ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Nucleoside-Diphosphates]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Nucleoside-Triphosphates]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DODECANOATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[LAUROYLCOA-CPD]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ07124]]
+
* Gene: [[SJ05591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13972]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21705]]
+
* Gene: [[SJ03650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20794]]
+
* Gene: [[SJ08690]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21816]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ08691]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08159]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21967]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16893]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20076]]
+
* Gene: [[SJ08692]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10125]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18114 18114]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00331 R00331]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P15531 P15531]
 
−
** [http://www.uniprot.org/uniprot/P15266 P15266]
 
−
** [http://www.uniprot.org/uniprot/P19804 P19804]
 
−
** [http://www.uniprot.org/uniprot/Q05982 Q05982]
 
−
** [http://www.uniprot.org/uniprot/P15532 P15532]
 
−
** [http://www.uniprot.org/uniprot/P22887 P22887]
 
−
** [http://www.uniprot.org/uniprot/P22392 P22392]
 
−
** [http://www.uniprot.org/uniprot/P65533 P65533]
 
−
** [http://www.uniprot.org/uniprot/O84508 O84508]
 
−
** [http://www.uniprot.org/uniprot/P84284 P84284]
 
−
** [http://www.uniprot.org/uniprot/P43802 P43802]
 
−
** [http://www.uniprot.org/uniprot/O26358 O26358]
 
−
** [http://www.uniprot.org/uniprot/P56075 P56075]
 
−
** [http://www.uniprot.org/uniprot/O67528 O67528]
 
−
** [http://www.uniprot.org/uniprot/O83974 O83974]
 
−
** [http://www.uniprot.org/uniprot/O29491 O29491]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE91 Q9ZE91]
 
−
** [http://www.uniprot.org/uniprot/Q58661 Q58661]
 
−
** [http://www.uniprot.org/uniprot/Q9PIG7 Q9PIG7]
 
−
** [http://www.uniprot.org/uniprot/Q13232 Q13232]
 
−
** [http://www.uniprot.org/uniprot/P48817 P48817]
 
−
** [http://www.uniprot.org/uniprot/P0A763 P0A763]
 
−
** [http://www.uniprot.org/uniprot/P08879 P08879]
 
−
** [http://www.uniprot.org/uniprot/Q02254 Q02254]
 
−
** [http://www.uniprot.org/uniprot/Q01402 Q01402]
 
−
** [http://www.uniprot.org/uniprot/Q01768 Q01768]
 
−
** [http://www.uniprot.org/uniprot/P47922 P47922]
 
−
** [http://www.uniprot.org/uniprot/P36010 P36010]
 
−
** [http://www.uniprot.org/uniprot/Q07661 Q07661]
 
−
** [http://www.uniprot.org/uniprot/Q9S8M2 Q9S8M2]
 
−
** [http://www.uniprot.org/uniprot/P47921 P47921]
 
−
** [http://www.uniprot.org/uniprot/P47923 P47923]
 
−
** [http://www.uniprot.org/uniprot/P81766 P81766]
 
−
** [http://www.uniprot.org/uniprot/P50589 P50589]
 
−
** [http://www.uniprot.org/uniprot/P74494 P74494]
 
−
** [http://www.uniprot.org/uniprot/Q59636 Q59636]
 
−
** [http://www.uniprot.org/uniprot/O49203 O49203]
 
−
** [http://www.uniprot.org/uniprot/Q39839 Q39839]
 
−
** [http://www.uniprot.org/uniprot/Q96559 Q96559]
 
−
** [http://www.uniprot.org/uniprot/P39207 P39207]
 
−
** [http://www.uniprot.org/uniprot/Q9ZGE0 Q9ZGE0]
 
−
** [http://www.uniprot.org/uniprot/P49740 P49740]
 
−
** [http://www.uniprot.org/uniprot/Q9UUY8 Q9UUY8]
 
−
** [http://www.uniprot.org/uniprot/O64903 O64903]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nucleoside diphosphate kinase}}
+
{{#set: common-name=long-chain fatty acid-coa ligase}}
−
{{#set: ec-number=ec-2.7.4.6}}
+
{{#set: ec-number=ec-6.2.1.3}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:23, 15 January 2021

Reaction RXN-16393

  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN&oldid=115624"