Difference between revisions of "KETOISOCAPROATE-RXN"

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(Created page with "Category:reaction == Reaction RXN-13441 == * direction: ** left-to-right * common-name: ** 3-oxo-icosatrienoyl-coa synthase * ec-number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:reaction == Reaction RXN4FS-2 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.71 ec-2.1.1.71] == Reaction formula == * 1 CPD...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13441 ==
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== Reaction RXN4FS-2 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 3-oxo-icosatrienoyl-coa synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
+
** [http://enzyme.expasy.org/EC/2.1.1.71 ec-2.1.1.71]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[LINOLENOYL-COA]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-14422]][c]
+
* 1 [[CPD-160]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PHOSPHATIDYLCHOLINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ11672]]
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* Gene: [[SJ18438]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19629]]
+
* Gene: [[SJ04932]]
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** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals):
+
* [[PWY-6825]], phosphatidylcholine biosynthesis V:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7619]], juniperonate biosynthesis:
+
* [[PWY4FS-4]], phosphatidylcholine biosynthesis IV:
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** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7602]], icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes):
+
* [[PWY4FS-3]], phosphatidylcholine biosynthesis III:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01320 R01320]
 +
* METANETX-RXN : MNXR103938
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32740 32740]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxo-icosatrienoyl-coa synthase}}
+
{{#set: ec-number=ec-2.1.1.71}}
−
{{#set: ec-number=ec-2.3.1.199}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=4}}
 
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 08:37, 15 March 2021

Reaction RXN4FS-2

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6825, phosphatidylcholine biosynthesis V:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY4FS-4, phosphatidylcholine biosynthesis IV:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY4FS-3, phosphatidylcholine biosynthesis III:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR103938
  • RHEA:





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