Difference between revisions of "KETOISOCAPROATE-RXN"

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(Created page with "Category:reaction == Reaction RXN-13441 == * direction: ** left-to-right * common-name: ** 3-oxo-icosatrienoyl-coa synthase * ec-number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:reaction == Reaction KETOISOCAPROATE-RXN == * direction: ** left-to-right * common-name: ** 4-methyl-2-oxopentanoate dehydrogenase (lipoamide) * ec-number: ** [ht...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13441 ==
+
== Reaction KETOISOCAPROATE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxo-icosatrienoyl-coa synthase
+
** 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
+
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[LINOLENOYL-COA]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-14422]][c]
+
* 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[BCAA-dehydrogenase-3MB-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11672]]
+
* Gene: [[SJ11017]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19629]]
+
* Gene: [[SJ18449]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals):
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7619]], juniperonate biosynthesis:
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7602]], icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes):
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115997
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P21839 P21839]
 +
** [http://www.uniprot.org/uniprot/P21953 P21953]
 +
** [http://www.uniprot.org/uniprot/P37940 P37940]
 +
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
 +
** [http://www.uniprot.org/uniprot/P37941 P37941]
 +
** [http://www.uniprot.org/uniprot/P11178 P11178]
 +
** [http://www.uniprot.org/uniprot/P12694 P12694]
 +
** [http://www.uniprot.org/uniprot/P09061 P09061]
 +
** [http://www.uniprot.org/uniprot/P09060 P09060]
 +
** [http://www.uniprot.org/uniprot/P11960 P11960]
 +
** [http://www.uniprot.org/uniprot/O84344 O84344]
 +
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
 +
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
 +
** [http://www.uniprot.org/uniprot/P35738 P35738]
 +
** [http://www.uniprot.org/uniprot/P50136 P50136]
 +
** [http://www.uniprot.org/uniprot/O48615 O48615]
 +
** [http://www.uniprot.org/uniprot/O03849 O03849]
 +
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 +
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 +
** [http://www.uniprot.org/uniprot/O82450 O82450]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxo-icosatrienoyl-coa synthase}}
+
{{#set: common-name=4-methyl-2-oxopentanoate dehydrogenase (lipoamide)}}
−
{{#set: ec-number=ec-2.3.1.199}}
+
{{#set: ec-number=ec-1.2.4.4}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction KETOISOCAPROATE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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