Difference between revisions of "METHYLACYLYLCOA-HYDROXY-RXN"

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(Created page with "Category:reaction == Reaction F16BDEPHOS-RXN == * direction: ** left-to-right * common-name: ** fructose-1,6-bisphosphatase ** fructose 1,6-bisphosphate 1-phosphatase * ec...")
(Created page with "Category:reaction == Reaction METHYLACYLYLCOA-HYDROXY-RXN == * direction: ** reversible * common-name: ** methylacrylyl-coa hydratase ** 3-hydroxy-isobutyryl-coa hydro-lya...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction F16BDEPHOS-RXN ==
+
== Reaction METHYLACYLYLCOA-HYDROXY-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** fructose-1,6-bisphosphatase
+
** methylacrylyl-coa hydratase
−
** fructose 1,6-bisphosphate 1-phosphatase
+
** 3-hydroxy-isobutyryl-coa hydro-lyase
 +
** enoyl-coa hydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.11 ec-3.1.3.11]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[CPD-12173]][c] '''<=>''' 1 [[METHACRYLYL-COA]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ14175]]
+
* Gene: [[SJ03913]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16950]]
+
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17320]]
+
* Gene: [[SJ21390]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13518]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14821]]
+
* Gene: [[SJ03584]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10275]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10463]]
+
* Gene: [[SJ14591]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20807]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
+
* [[VALDEG-PWY]], L-valine degradation I:
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY66-399]], gluconeogenesis III:
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR138263
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11065 11065]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31178 31178]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04224 R04224]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09199 P09199]
+
** [http://www.uniprot.org/uniprot/P21177 P21177]
−
** [http://www.uniprot.org/uniprot/P19112 P19112]
+
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
−
** [http://www.uniprot.org/uniprot/P22780 P22780]
+
** [http://www.uniprot.org/uniprot/O29814 O29814]
−
** [http://www.uniprot.org/uniprot/P09467 P09467]
+
** [http://www.uniprot.org/uniprot/O29299 O29299]
−
** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
+
** [http://www.uniprot.org/uniprot/O34893 O34893]
−
** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
+
** [http://www.uniprot.org/uniprot/O23520 O23520]
−
** [http://www.uniprot.org/uniprot/P09202 P09202]
+
** [http://www.uniprot.org/uniprot/P76082 P76082]
−
** [http://www.uniprot.org/uniprot/Q45597 Q45597]
+
** [http://www.uniprot.org/uniprot/P64016 P64016]
−
** [http://www.uniprot.org/uniprot/P45292 P45292]
+
** [http://www.uniprot.org/uniprot/P07896 P07896]
−
** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
+
** [http://www.uniprot.org/uniprot/O53419 O53419]
−
** [http://www.uniprot.org/uniprot/P19912 P19912]
+
** [http://www.uniprot.org/uniprot/P94549 P94549]
−
** [http://www.uniprot.org/uniprot/P19911 P19911]
+
** [http://www.uniprot.org/uniprot/Q13825 Q13825]
−
** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
+
** [http://www.uniprot.org/uniprot/P45361 P45361]
−
** [http://www.uniprot.org/uniprot/P09201 P09201]
+
** [http://www.uniprot.org/uniprot/P28793 P28793]
−
** [http://www.uniprot.org/uniprot/P0A993 P0A993]
+
** [http://www.uniprot.org/uniprot/P14604 P14604]
−
** [http://www.uniprot.org/uniprot/P00636 P00636]
+
** [http://www.uniprot.org/uniprot/P22414 P22414]
−
** [http://www.uniprot.org/uniprot/P23014 P23014]
+
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
−
** [http://www.uniprot.org/uniprot/P27994 P27994]
+
** [http://www.uniprot.org/uniprot/P34559 P34559]
−
** [http://www.uniprot.org/uniprot/P14766 P14766]
+
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
−
** [http://www.uniprot.org/uniprot/P09195 P09195]
+
** [http://www.uniprot.org/uniprot/P55100 P55100]
−
** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
+
** [http://www.uniprot.org/uniprot/P53526 P53526]
−
** [http://www.uniprot.org/uniprot/P25851 P25851]
+
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
−
** [http://www.uniprot.org/uniprot/Q05079 Q05079]
+
** [http://www.uniprot.org/uniprot/O52797 O52797]
−
** [http://www.uniprot.org/uniprot/P46275 P46275]
 
−
** [http://www.uniprot.org/uniprot/P46276 P46276]
 
−
** [http://www.uniprot.org/uniprot/Q43139 Q43139]
 
−
** [http://www.uniprot.org/uniprot/P00637 P00637]
 
−
** [http://www.uniprot.org/uniprot/O65827 O65827]
 
−
** [http://www.uniprot.org/uniprot/Q42796 Q42796]
 
−
** [http://www.uniprot.org/uniprot/P46267 P46267]
 
−
** [http://www.uniprot.org/uniprot/Q07204 Q07204]
 
−
** [http://www.uniprot.org/uniprot/P22418 P22418]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=fructose 1,6-bisphosphate 1-phosphatase|fructose-1,6-bisphosphatase}}
+
{{#set: common-name=3-hydroxy-isobutyryl-coa hydro-lyase|methylacrylyl-coa hydratase|enoyl-coa hydratase}}
−
{{#set: ec-number=ec-3.1.3.11}}
+
{{#set: ec-number=ec-4.2.1.17}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction METHYLACYLYLCOA-HYDROXY-RXN

  • direction:
    • reversible
  • common-name:
    • methylacrylyl-coa hydratase
    • 3-hydroxy-isobutyryl-coa hydro-lyase
    • enoyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • VALDEG-PWY, L-valine degradation I:
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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