Difference between revisions of "METHYLVALERATE-RXN"

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(Created page with "Category:reaction == Reaction 2KETO-3METHYLVALERATE-RXN == * direction: ** reversible * common-name: ** (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating) * ec-number:...")
(Created page with "Category:reaction == Reaction CYTIDEAM-RXN == * direction: ** left-to-right * common-name: ** deoxycytidine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.5...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 2KETO-3METHYLVALERATE-RXN ==
+
== Reaction CYTIDEAM-RXN ==
 
* direction:
 
* direction:
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
** (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
+
** deoxycytidine deaminase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.2.1 ec-1.2.1]
+
** [http://enzyme.expasy.org/EC/3.5.4.5 ec-3.5.4.5]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[2-METHYL-BUTYRYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
+
* 1 [[DEOXYCYTIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DEOXYURIDINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ11017]]
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* Gene: [[SJ17454]]
** Category: [[orthology]]
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** Category: [[annotation]]
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ18449]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ11016]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5108]], L-isoleucine biosynthesis V:
+
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation:
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
* [[ILEUDEG-PWY]], L-isoleucine degradation I:
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30910 30910]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13434 13434]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R03171 R03171]
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** [http://www.genome.jp/dbget-bin/www_bget?R02485 R02485]
{{#set: direction=reversible}}
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* UNIPROT:
{{#set: common-name=(s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)}}
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** [http://www.uniprot.org/uniprot/P47718 P47718]
{{#set: ec-number=ec-1.2.1}}
+
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
{{#set: nb gene associated=3}}
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** [http://www.uniprot.org/uniprot/P47298 P47298]
 +
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
 +
** [http://www.uniprot.org/uniprot/P32320 P32320]
 +
** [http://www.uniprot.org/uniprot/P75051 P75051]
 +
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
 +
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
 +
** [http://www.uniprot.org/uniprot/O65571 O65571]
 +
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
 +
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
 +
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
 +
** [http://www.uniprot.org/uniprot/O65896 O65896]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=deoxycytidine deaminase}}
 +
{{#set: ec-number=ec-3.5.4.5}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:38, 5 January 2021

Reaction CYTIDEAM-RXN

  • direction:
    • left-to-right
  • common-name:
    • deoxycytidine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7199, pyrimidine deoxyribonucleosides salvage:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7181, pyrimidine deoxyribonucleosides degradation:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links