Difference between revisions of "CPD-10792"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11836 RXN-11836] == * direction: ** left-to-right * common-name: ** 23s rrna pseudouridine2605...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGDECARBOX-RXN ARGDECARBOX-RXN] == * direction: ** reversible * common-name: ** arginine decarboxy...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11836 RXN-11836] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGDECARBOX-RXN ARGDECARBOX-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 23s rrna pseudouridine2605 synthase
+
** arginine decarboxylase, biosynthetic
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.99.22 ec-5.4.99.22]
+
** [http://enzyme.expasy.org/EC/4.1.1.19 ec-4.1.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[23S-rRNA-uridine2605]][c] '''=>''' 1 [[23S-rRNA-pseudouridine2605]][c]
+
* 1 [[ARG]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AGMATHINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05951]]
+
* Gene: [[SJ12405]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ07661]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11677]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1299]], arginine dependent acid resistance: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1299 PWY0-1299]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42521 42521]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17644 17644]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: common-name=23s rrna pseudouridine2605 synthase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00566 R00566]
−
{{#set: ec-number=ec-5.4.99.22}}
+
* UNIPROT:
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P21170 P21170]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/Q9PPF5 Q9PPF5]
 +
** [http://www.uniprot.org/uniprot/Q9JT25 Q9JT25]
 +
** [http://www.uniprot.org/uniprot/P49726 P49726]
 +
** [http://www.uniprot.org/uniprot/P22220 P22220]
 +
** [http://www.uniprot.org/uniprot/P28629 P28629]
 +
** [http://www.uniprot.org/uniprot/Q43075 Q43075]
 +
** [http://www.uniprot.org/uniprot/Q9SI64 Q9SI64]
 +
** [http://www.uniprot.org/uniprot/P72587 P72587]
 +
** [http://www.uniprot.org/uniprot/P74576 P74576]
 +
** [http://www.uniprot.org/uniprot/O24128 O24128]
 +
** [http://www.uniprot.org/uniprot/O23141 O23141]
 +
** [http://www.uniprot.org/uniprot/Q39827 Q39827]
 +
** [http://www.uniprot.org/uniprot/O81161 O81161]
 +
** [http://www.uniprot.org/uniprot/O04429 O04429]
 +
** [http://www.uniprot.org/uniprot/Q96412 Q96412]
 +
** [http://www.uniprot.org/uniprot/O81177 O81177]
 +
** [http://www.uniprot.org/uniprot/O64453 O64453]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=arginine decarboxylase, biosynthetic}}
 +
{{#set: ec-number=ec-4.1.1.19}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction ARGDECARBOX-RXN

  • direction:
    • reversible
  • common-name:
    • arginine decarboxylase, biosynthetic
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1299, arginine dependent acid resistance: PWY0-1299
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I: PWY-40
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6834, spermidine biosynthesis III: PWY-6834
    • 2 reactions found over 4 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway): PWY0-823
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-43, putrescine biosynthesis II: PWY-43
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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