CPD-10792

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of MODEL_NAME results to a Genome scale Model containing 3356 reactions, 3250 metabolites, 5018 genes and 1391 pathways. This GeM was obtained based on the following sources:

• Based on orthology data:
  • Creation of a global metabolic network containing 1879 reactions
    • From template ectocarpus_siliculosus creation of a metabolic network containing: 1492 reactions
    • From template arabidopsis_thaliana creation of a metabolic network containing: 419 reactions
    • From template nannochloropsis_salina creation of a metabolic network containing: 589 reactions
• Based on annotation data:
  • Creation of a metabolic network containing 2552 reactions
• Based on expertise:
  • 101 reaction(s) added
• Based on gap-filling:
  • • 90 reaction(s) added

• List of tools used:
  • Tool: Pantograph
  • Tool: PathwayTools

• • Tool: Meneco

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: CONTACT_MAIL