Difference between revisions of "NARINGENIN-3-DIOXYGENASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-14262 == * direction: ** reversible * common-name: ** lauroyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.8.7 ec-1...")
(Created page with "Category:reaction == Reaction NARINGENIN-3-DIOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.9 ec-1.14.11.9] * synonymo...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14262 ==
+
== Reaction NARINGENIN-3-DIOXYGENASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** lauroyl-coa dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.8.7 ec-1.3.8.7]
+
** [http://enzyme.expasy.org/EC/1.14.11.9 ec-1.14.11.9]
 +
* synonymous:
 +
** flavonone 3-hydroxylase
 +
** naringenin,2-oxoglutarate 3-dioxygenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[LAUROYLCOA-CPD]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CPD-7222]][c] '''+''' 1 [[ETF-Reduced]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NARINGENIN-CMPD]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15262]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[annotation]]
+
* Gene: [[SJ14675]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14677]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14672]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08018]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14670]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07557]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR107509
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=47296 47296]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03857 R03857]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02444 R02444]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=lauroyl-coa dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P28038 P28038]
−
{{#set: ec-number=ec-1.3.8.7}}
+
** [http://www.uniprot.org/uniprot/Q07353 Q07353]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q06942 Q06942]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/Q05964 Q05964]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q05963 Q05963]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q05965 Q05965]
 +
** [http://www.uniprot.org/uniprot/Q43741 Q43741]
 +
** [http://www.uniprot.org/uniprot/Q42927 Q42927]
 +
** [http://www.uniprot.org/uniprot/Q40344 Q40344]
 +
** [http://www.uniprot.org/uniprot/O49047 O49047]
 +
** [http://www.uniprot.org/uniprot/Q43262 Q43262]
 +
{{#set: direction=left-to-right}}
 +
{{#set: ec-number=ec-1.14.11.9}}
 +
{{#set: synonymous=naringenin,2-oxoglutarate 3-dioxygenase|flavonone 3-hydroxylase}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:19, 18 March 2021

Reaction NARINGENIN-3-DIOXYGENASE-RXN

  • direction:
    • left-to-right
  • ec-number:
  • synonymous:
    • flavonone 3-hydroxylase
    • naringenin,2-oxoglutarate 3-dioxygenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum):
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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