Difference between revisions of "NICONUCADENYLYLTRAN-RXN"

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(Created page with "Category:reaction == Reaction RXN-12590 == * direction: ** left-to-right * common-name: ** pyridoxal 5′-phosphate synthase (glutamine hydrolyzing) ** pyridoxal 5'-ph...")
(Created page with "Category:reaction == Reaction RIB5PISOM-RXN == * direction: ** reversible * common-name: ** ribose-5-phosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12590 ==
+
== Reaction RIB5PISOM-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** pyridoxal 5′-phosphate synthase (glutamine hydrolyzing)
+
** ribose-5-phosphate isomerase
−
** pyridoxal 5'-phosphate synthase
+
* ec-number:
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6]
−
** pdxst
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMMONIUM]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[RIBOSE-5P]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[Pi]][c] '''+''' 4 [[WATER]][c]
+
* 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10267]]
+
* Gene: [[SJ00411]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19163]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07743]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[P124-PWY]], Bifidobacterium shunt:
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10088 R10088]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26408 26408]
+
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
−
{{#set: common-name=pyridoxal 5'-phosphate synthase|pyridoxal 5&prime;-phosphate synthase (glutamine hydrolyzing)}}
+
** [http://www.uniprot.org/uniprot/P44725 P44725]
−
{{#set: synonymous=pdxst}}
+
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
 +
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
 +
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
 +
** [http://www.uniprot.org/uniprot/P37351 P37351]
 +
** [http://www.uniprot.org/uniprot/P74234 P74234]
 +
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=ribose-5-phosphate isomerase}}
 +
{{#set: ec-number=ec-5.3.1.6}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:24, 15 January 2021

Reaction RIB5PISOM-RXN

  • direction:
    • reversible
  • common-name:
    • ribose-5-phosphate isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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