Difference between revisions of "NUCLEOSIDE-DIP-KIN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMPCYCLOHYDROLASE-RXN IMPCYCLOHYDROLASE-RXN] == * direction: ** reversible * common-name: ** imp cy...")
(Created page with "Category:reaction == Reaction NUCLEOSIDE-DIP-KIN-RXN == * direction: ** left-to-right * common-name: ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expasy...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMPCYCLOHYDROLASE-RXN IMPCYCLOHYDROLASE-RXN] ==
+
== Reaction NUCLEOSIDE-DIP-KIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** imp cyclohydrolase
+
** nucleoside diphosphate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.10 ec-3.5.4.10]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[IMP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Nucleoside-Diphosphates]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Nucleoside-Triphosphates]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21660]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ07124]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21705]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20794]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21816]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08159]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21967]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16893]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20076]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10125]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7234 PWY-7234]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR106478
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18448 18448]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18114 18114]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01127 R01127]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00331 R00331]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43852 P43852]
+
** [http://www.uniprot.org/uniprot/P15531 P15531]
−
** [http://www.uniprot.org/uniprot/P12048 P12048]
+
** [http://www.uniprot.org/uniprot/P15266 P15266]
−
** [http://www.uniprot.org/uniprot/P31335 P31335]
+
** [http://www.uniprot.org/uniprot/P19804 P19804]
−
** [http://www.uniprot.org/uniprot/P26978 P26978]
+
** [http://www.uniprot.org/uniprot/Q05982 Q05982]
−
** [http://www.uniprot.org/uniprot/P15639 P15639]
+
** [http://www.uniprot.org/uniprot/P15532 P15532]
−
** [http://www.uniprot.org/uniprot/Q9PNY2 Q9PNY2]
+
** [http://www.uniprot.org/uniprot/P22887 P22887]
−
** [http://www.uniprot.org/uniprot/Q9JUQ8 Q9JUQ8]
+
** [http://www.uniprot.org/uniprot/P22392 P22392]
−
** [http://www.uniprot.org/uniprot/P31939 P31939]
+
** [http://www.uniprot.org/uniprot/P65533 P65533]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/O84508 O84508]
−
{{#set: common-name=imp cyclohydrolase}}
+
** [http://www.uniprot.org/uniprot/P84284 P84284]
−
{{#set: ec-number=ec-3.5.4.10}}
+
** [http://www.uniprot.org/uniprot/P43802 P43802]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/O26358 O26358]
−
{{#set: nb pathway associated=3}}
+
** [http://www.uniprot.org/uniprot/P56075 P56075]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/O67528 O67528]
 +
** [http://www.uniprot.org/uniprot/O83974 O83974]
 +
** [http://www.uniprot.org/uniprot/O29491 O29491]
 +
** [http://www.uniprot.org/uniprot/Q9ZE91 Q9ZE91]
 +
** [http://www.uniprot.org/uniprot/Q58661 Q58661]
 +
** [http://www.uniprot.org/uniprot/Q9PIG7 Q9PIG7]
 +
** [http://www.uniprot.org/uniprot/Q13232 Q13232]
 +
** [http://www.uniprot.org/uniprot/P48817 P48817]
 +
** [http://www.uniprot.org/uniprot/P0A763 P0A763]
 +
** [http://www.uniprot.org/uniprot/P08879 P08879]
 +
** [http://www.uniprot.org/uniprot/Q02254 Q02254]
 +
** [http://www.uniprot.org/uniprot/Q01402 Q01402]
 +
** [http://www.uniprot.org/uniprot/Q01768 Q01768]
 +
** [http://www.uniprot.org/uniprot/P47922 P47922]
 +
** [http://www.uniprot.org/uniprot/P36010 P36010]
 +
** [http://www.uniprot.org/uniprot/Q07661 Q07661]
 +
** [http://www.uniprot.org/uniprot/Q9S8M2 Q9S8M2]
 +
** [http://www.uniprot.org/uniprot/P47921 P47921]
 +
** [http://www.uniprot.org/uniprot/P47923 P47923]
 +
** [http://www.uniprot.org/uniprot/P81766 P81766]
 +
** [http://www.uniprot.org/uniprot/P50589 P50589]
 +
** [http://www.uniprot.org/uniprot/P74494 P74494]
 +
** [http://www.uniprot.org/uniprot/Q59636 Q59636]
 +
** [http://www.uniprot.org/uniprot/O49203 O49203]
 +
** [http://www.uniprot.org/uniprot/Q39839 Q39839]
 +
** [http://www.uniprot.org/uniprot/Q96559 Q96559]
 +
** [http://www.uniprot.org/uniprot/P39207 P39207]
 +
** [http://www.uniprot.org/uniprot/Q9ZGE0 Q9ZGE0]
 +
** [http://www.uniprot.org/uniprot/P49740 P49740]
 +
** [http://www.uniprot.org/uniprot/Q9UUY8 Q9UUY8]
 +
** [http://www.uniprot.org/uniprot/O64903 O64903]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=nucleoside diphosphate kinase}}
 +
{{#set: ec-number=ec-2.7.4.6}}
 +
{{#set: nb gene associated=9}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction NUCLEOSIDE-DIP-KIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • nucleoside diphosphate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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