Difference between revisions of "ORPRT"

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(Created page with "Category:reaction == Reaction RXN-12878 == * direction: ** left-to-right * common-name: ** glutamate dehydrogenase (ferredoxin) == Reaction formula == * 1 GLT[c] '''+'...")
(Created page with "Category:reaction == Reaction FORMYLTHFDEFORMYL-RXN == * direction: ** left-to-right * common-name: ** formyltetrahydrofolate deformylase * ec-number: ** [http://enzyme.ex...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12878 ==
+
== Reaction FORMYLTHFDEFORMYL-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamate dehydrogenase (ferredoxin)
+
** formyltetrahydrofolate deformylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.5.1.10 ec-3.5.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
+
* 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12700]]
+
* Gene: [[SJ15379]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13463]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10812]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04921]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04922]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 +
** '''6''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32192 32192]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19834 19834]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10086 R10086]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00944 R00944]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P37051 P37051]
 +
** [http://www.uniprot.org/uniprot/Q03432 Q03432]
 +
** [http://www.uniprot.org/uniprot/Q9PPC9 Q9PPC9]
 +
** [http://www.uniprot.org/uniprot/Q46339 Q46339]
 +
** [http://www.uniprot.org/uniprot/Q9X7F7 Q9X7F7]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate dehydrogenase (ferredoxin)}}
+
{{#set: common-name=formyltetrahydrofolate deformylase}}
−
{{#set: nb gene associated=5}}
+
{{#set: ec-number=ec-3.5.1.10}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:19, 14 January 2021

Reaction FORMYLTHFDEFORMYL-RXN

  • direction:
    • left-to-right
  • common-name:
    • formyltetrahydrofolate deformylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7909, formaldehyde oxidation VII (THF pathway):
    • 3 reactions found over 4 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 6 reactions found over 17 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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