Difference between revisions of "OXALODECARB-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47...")
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylas...")
 
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317] ==
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== Reaction OXALODECARB-RXN ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
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** left-to-right
** [http://metacyc.org/META/NEW-IMAGE?object=tax-3193 tax-3193]
 
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
** d-galactose degradation i (leloir pathway)
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** malate dehydrogenase (decarboxylating) (nad+)
== Reaction(s) found ==
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** oxaloacetate decarboxylase
* [[ALDOSE1EPIM-RXN]]
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* ec-number:
* [[GALACTOKIN-RXN]]
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** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
* [[GALACTURIDYLYLTRANS-RXN]]
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** [http://enzyme.expasy.org/EC/4.1.1.3 ec-4.1.1.3]
* [[PHOSPHOGLUCMUT-RXN]]
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** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
* [[UDPGLUCEPIM-RXN]]
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== Reaction formula ==
== Reaction(s) not found ==
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* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
All reactions of this pathways are in present
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== Gene(s) associated with this reaction  ==
{{#set: taxonomic-range=tax-4751|tax-2|tax-3193}}
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* Gene: [[SJ11643]]
{{#set: common-name=d-galactose degradation i (leloir pathway)}}
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** Category: [[annotation]]
{{#set: nb reaction found=5}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
{{#set: completion rate=1.0}}
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** Category: [[orthology]]
{{#set: nb total reaction=5}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ14191]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ13180]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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== Pathway(s) ==
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* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6339]], syringate degradation:
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
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** '''2''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR102097
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P13187 P13187]
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** [http://www.uniprot.org/uniprot/P13155 P13155]
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** [http://www.uniprot.org/uniprot/P13156 P13156]
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** [http://www.uniprot.org/uniprot/Q58628 Q58628]
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{{#set: direction=left-to-right}}
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{{#set: common-name=oxaloacetate decarboxylase|malate dehydrogenase (decarboxylating) (nad+)}}
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{{#set: ec-number=ec-1.1.1.40|ec-1.1.1.38|ec-4.1.1.3}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction OXALODECARB-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6339, syringate degradation:
    • 2 reactions found over 9 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links