Difference between revisions of "Orthology"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.15-RXN 2.7.8.15-RXN] == * direction: ** left-to-right * common-name: ** udp-n-acetylglucosami...")
(Created page with "{{#ask: Category:reaction reconstruction category::orthology | ?common-name | ?ec-number | ?reconstruction tool | ?reconstruction source | ?reconstruction comment | ?n...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction category::orthology]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.15-RXN 2.7.8.15-RXN] ==
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| ?common-name
* direction:
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| ?ec-number
** left-to-right
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| ?reconstruction tool
* common-name:
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| ?reconstruction source
** udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotransferase
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| ?reconstruction comment
* ec-number:
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| ?nb gene associated
** [http://enzyme.expasy.org/EC/2.7.8.15 ec-2.7.8.15]
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| ?nb pathway associated
== Reaction formula ==
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}}
* 1 [[DOLICHOLP]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[CPD-190]][c] '''+''' 1 [[UMP]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[SJ02910]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation initial phase (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
 
** '''16''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13289 13289]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01007 R01007]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P07286 P07286]
 
** [http://www.uniprot.org/uniprot/P23338 P23338]
 
** [http://www.uniprot.org/uniprot/P42864 P42864]
 
** [http://www.uniprot.org/uniprot/P39465 P39465]
 
** [http://www.uniprot.org/uniprot/Q9UY90 Q9UY90]
 
** [http://www.uniprot.org/uniprot/Q58513 Q58513]
 
** [http://www.uniprot.org/uniprot/P42867 P42867]
 
** [http://www.uniprot.org/uniprot/P42881 P42881]
 
** [http://www.uniprot.org/uniprot/P96000 P96000]
 
** [http://www.uniprot.org/uniprot/Q9M2M5 Q9M2M5]
 
** [http://www.uniprot.org/uniprot/O22211 O22211]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotransferase}}
 
{{#set: ec-number=ec-2.7.8.15}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:18, 18 March 2021