Difference between revisions of "Orthology"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] == * direction: ** left-to-right * common-name: ** cobinamide adenosyltransfer...")
 
(Created page with "{{#ask: Category:reaction reconstruction category::orthology | ?common-name | ?ec-number | ?reconstruction tool | ?reconstruction source | ?reconstruction comment | ?n...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction category::orthology]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] ==
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| ?common-name
* direction:
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| ?ec-number
** left-to-right
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| ?reconstruction tool
* common-name:
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| ?reconstruction source
** cobinamide adenosyltransferase
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| ?reconstruction comment
* ec-number:
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| ?nb gene associated
** [http://enzyme.expasy.org/EC/2.5.1.17 ec-2.5.1.17]
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| ?nb pathway associated
== Reaction formula ==
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}}
* 1 [[ATP]][c] '''+''' 1 [[COBINAMIDE]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE]][c] '''+''' 1 [[P3I]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[SJ11469]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
* [[COBALSYN-PWY]], superpathway of adenosylcobalamin salvage from cobinamide I: [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
 
** '''1''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY-6269]], superpathway of adenosylcobalamin salvage from cobinamide II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269]
 
** '''1''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14726 14726]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R07268 R07268]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=cobinamide adenosyltransferase}}
 
{{#set: ec-number=ec-2.5.1.17}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:18, 18 March 2021