Difference between revisions of "Orthology"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] == * direction: ** left-to-right * common-name: ** cobinamide adenosyltransfer...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.15-RXN 2.7.8.15-RXN] == * direction: ** left-to-right * common-name: ** udp-n-acetylglucosami...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.15-RXN 2.7.8.15-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotransferase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.7.8.15 ec-2.7.8.15] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DOLICHOLP]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[CPD-190]][c] '''+''' 1 [[UMP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ02910]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation initial phase (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS] |
− | + | ** '''16''' reactions found over '''19''' reactions in the full pathway | |
− | |||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13289 13289] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01007 R01007] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P07286 P07286] | ||
+ | ** [http://www.uniprot.org/uniprot/P23338 P23338] | ||
+ | ** [http://www.uniprot.org/uniprot/P42864 P42864] | ||
+ | ** [http://www.uniprot.org/uniprot/P39465 P39465] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UY90 Q9UY90] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58513 Q58513] | ||
+ | ** [http://www.uniprot.org/uniprot/P42867 P42867] | ||
+ | ** [http://www.uniprot.org/uniprot/P42881 P42881] | ||
+ | ** [http://www.uniprot.org/uniprot/P96000 P96000] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9M2M5 Q9M2M5] | ||
+ | ** [http://www.uniprot.org/uniprot/O22211 O22211] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotransferase}} |
− | {{#set: ec-number=ec-2. | + | {{#set: ec-number=ec-2.7.8.15}} |
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 14:25, 26 August 2019
Contents
Reaction 2.7.8.15-RXN
- direction:
- left-to-right
- common-name:
- udp-n-acetylglucosamine—dolichyl-phosphate n-acetylglucosaminephosphotransferase
- ec-number:
Reaction formula
- 1 DOLICHOLP[c] + 1 UDP-N-ACETYL-D-GLUCOSAMINE[c] => 1 CPD-190[c] + 1 UMP[c]
Gene(s) associated with this reaction
- Gene: SJ02910
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS, protein N-glycosylation initial phase (eukaryotic): MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
- 16 reactions found over 19 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: