Difference between revisions of "PGLYCDEHYDROG-RXN"

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(Created page with "Category:reaction == Reaction UTPHEXPURIDYLYLTRANS-RXN == * direction: ** reversible * common-name: ** udp-galactose pyrophosphorylase ** utp-monosaccharide-1-phosphate ur...")
(Created page with "Category:reaction == Reaction PGLYCDEHYDROG-RXN == * direction: ** reversible * common-name: ** d-3-phosphoglycerate dehydrogenase * ec-number: ** [http://enzyme.expasy.or...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UTPHEXPURIDYLYLTRANS-RXN ==
+
== Reaction PGLYCDEHYDROG-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** udp-galactose pyrophosphorylase
+
** d-3-phosphoglycerate dehydrogenase
−
** utp-monosaccharide-1-phosphate uridylyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.64 ec-2.7.7.64]
+
** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95]
−
** [http://enzyme.expasy.org/EC/2.7.7.10 ec-2.7.7.10]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GALACTOSE-1P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UTP]][c] '''<=>''' 1 [[CPD-14553]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08662]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ02143]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05850]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13642]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06954]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13526]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10502]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09109]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6527]], stachyose degradation:
+
* [[SERSYN-PWY]], L-serine biosynthesis I:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-3821]], D-galactose detoxification:
 
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100014
+
* METANETX-RXN : MNXR102527
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14212 14212]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12644 12644]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00502 R00502]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22714 P22714]
+
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
−
** [http://www.uniprot.org/uniprot/P96994 P96994]
+
** [http://www.uniprot.org/uniprot/P43885 P43885]
−
** [http://www.uniprot.org/uniprot/P39575 P39575]
+
** [http://www.uniprot.org/uniprot/P35136 P35136]
−
** [http://www.uniprot.org/uniprot/P40908 P40908]
+
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
 +
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
 +
** [http://www.uniprot.org/uniprot/P40510 P40510]
 +
** [http://www.uniprot.org/uniprot/P40054 P40054]
 +
** [http://www.uniprot.org/uniprot/O49485 O49485]
 +
** [http://www.uniprot.org/uniprot/P87228 P87228]
 +
** [http://www.uniprot.org/uniprot/O04130 O04130]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=utp-monosaccharide-1-phosphate uridylyltransferase|udp-galactose pyrophosphorylase}}
+
{{#set: common-name=d-3-phosphoglycerate dehydrogenase}}
−
{{#set: ec-number=ec-2.7.7.64|ec-2.7.7.10}}
+
{{#set: ec-number=ec-1.1.1.95}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction PGLYCDEHYDROG-RXN

  • direction:
    • reversible
  • common-name:
    • d-3-phosphoglycerate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SERSYN-PWY, L-serine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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