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| − | [[Category:reaction]] | + | {{#ask: [[Category:reaction]] [[reconstruction tool::pantograph]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
| + | | ?common-name |
| − | * direction:
| + | | ?ec-number |
| − | ** left-to-right
| + | | ?reconstruction category |
| − | * common-name:
| + | | ?reconstruction source |
| − | ** uroporphyrinogen decarboxylase
| + | | ?reconstruction comment |
| − | * ec-number:
| + | | ?nb gene associated |
| − | ** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
| + | | ?nb pathway associated |
| − | == Reaction formula ==
| + | }} |
| − | * 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
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| − | == Gene(s) associated with this reaction ==
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| − | * Gene: [[SJ09367]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ03594]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ09370]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | == Pathway(s) ==
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| − | * [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
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| − | ** '''3''' reactions found over '''5''' reactions in the full pathway
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| − | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
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| − | * [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
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| − | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
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| − | * [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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| − | ** '''5''' reactions found over '''4''' reactions in the full pathway
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| − | * [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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| − | ** '''4''' reactions found over '''9''' reactions in the full pathway
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| − | * [[HEMESYN2-PWY]], heme b biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
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| − | == Reconstruction information ==
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| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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| − | == External links ==
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| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P06132 P06132]
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| − | ** [http://www.uniprot.org/uniprot/P16891 P16891]
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| − | ** [http://www.uniprot.org/uniprot/P32395 P32395]
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| − | ** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
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| − | ** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
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| − | ** [http://www.uniprot.org/uniprot/P29680 P29680]
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| − | ** [http://www.uniprot.org/uniprot/P32347 P32347]
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| − | ** [http://www.uniprot.org/uniprot/P32920 P32920]
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| − | ** [http://www.uniprot.org/uniprot/P54224 P54224]
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| − | ** [http://www.uniprot.org/uniprot/O81220 O81220]
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| − | ** [http://www.uniprot.org/uniprot/P70697 P70697]
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| − | {{#set: direction=left-to-right}}
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| − | {{#set: common-name=uroporphyrinogen decarboxylase}}
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| − | {{#set: ec-number=ec-4.1.1.37}}
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| − | {{#set: nb gene associated=3}}
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| − | {{#set: nb pathway associated=7}}
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| − | {{#set: reconstruction category=annotation|orthology}}
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| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
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| − | {{#set: reconstruction comment=n.a}}
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| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
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