Difference between revisions of "RIBOFLAVINSYNDEAM-RXN"
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(Created page with "Category:reaction == Reaction 2-MEBUCOA-FAD-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.3.99.12 ec-1.3.99.12] * synonymous: ** branche...") |
(Created page with "Category:reaction == Reaction RIBOFLAVINSYNDEAM-RXN == * direction: ** left-to-right * common-name: ** diaminohydroxyphosphoribosylaminopyrimidine deaminase * ec-number: *...") |
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| (One intermediate revision by one other user not shown) | |||
| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RIBOFLAVINSYNDEAM-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
| + | * common-name: | ||
| + | ** diaminohydroxyphosphoribosylaminopyrimidine deaminase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.5.4.26 ec-3.5.4.26] |
| − | |||
| − | |||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ22508]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ17550]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): | ||
| + | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * METANETX-RXN : MNXR97435 |
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21869 21869] |
| − | {{#set: nb gene associated= | + | * LIGAND-RXN: |
| − | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459] |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: direction=left-to-right}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: common-name=diaminohydroxyphosphoribosylaminopyrimidine deaminase}} |
| + | {{#set: ec-number=ec-3.5.4.26}} | ||
| + | {{#set: nb gene associated=2}} | ||
| + | {{#set: nb pathway associated=1}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:21, 18 March 2021
Contents
Reaction RIBOFLAVINSYNDEAM-RXN
- direction:
- left-to-right
- common-name:
- diaminohydroxyphosphoribosylaminopyrimidine deaminase
- ec-number:
Reaction formula
- 1 DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR[c] + 1 PROTON[c] + 1 WATER[c] => 1 AMMONIUM[c] + 1 CPD-602[c]
Gene(s) associated with this reaction
- Gene: SJ22508
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ17550
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
- 8 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
