Difference between revisions of "RIBOFLAVINSYNDEAM-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATIDm ATIDm] == * direction: ** left-to-right * common-name: ** atp:idp phosphotransferase, mitocho...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] == * direction: ** left-to-right * common-name: ** 6-phosphofructo...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATIDm ATIDm] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** atp:idp phosphotransferase, mitochondria
+
** 6-phosphofructokinase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.11 ec-2.7.1.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ATP]][m] '''+''' 1.0 [[IDP]][m] '''=>''' 1.0 [[ADP]][m] '''+''' 1.0 [[ITP]][m]
+
* 1 [[ATP]][c] '''+''' 1 [[FRUCTOSE-6P]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10125]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ02434]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04582]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16394]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16110 16110]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00756 R00756]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q7M3F7 Q7M3F7]
 +
** [http://www.uniprot.org/uniprot/Q7M4J2 Q7M4J2]
 +
** [http://www.uniprot.org/uniprot/P12382 P12382]
 +
** [http://www.uniprot.org/uniprot/Q27665 Q27665]
 +
** [http://www.uniprot.org/uniprot/P52034 P52034]
 +
** [http://www.uniprot.org/uniprot/Q7M4K9 Q7M4K9]
 +
** [http://www.uniprot.org/uniprot/P43863 P43863]
 +
** [http://www.uniprot.org/uniprot/P20275 P20275]
 +
** [http://www.uniprot.org/uniprot/P47457 P47457]
 +
** [http://www.uniprot.org/uniprot/Q01813 Q01813]
 +
** [http://www.uniprot.org/uniprot/Q07636 Q07636]
 +
** [http://www.uniprot.org/uniprot/P16861 P16861]
 +
** [http://www.uniprot.org/uniprot/P16862 P16862]
 +
** [http://www.uniprot.org/uniprot/P00512 P00512]
 +
** [http://www.uniprot.org/uniprot/P0A796 P0A796]
 +
** [http://www.uniprot.org/uniprot/P06999 P06999]
 +
** [http://www.uniprot.org/uniprot/P08237 P08237]
 +
** [http://www.uniprot.org/uniprot/P00511 P00511]
 +
** [http://www.uniprot.org/uniprot/P70927 P70927]
 +
** [http://www.uniprot.org/uniprot/Q7M3F5 Q7M3F5]
 +
** [http://www.uniprot.org/uniprot/Q9TWY0 Q9TWY0]
 +
** [http://www.uniprot.org/uniprot/P30835 P30835]
 +
** [http://www.uniprot.org/uniprot/Q03215 Q03215]
 +
** [http://www.uniprot.org/uniprot/Q03216 Q03216]
 +
** [http://www.uniprot.org/uniprot/P80019 P80019]
 +
** [http://www.uniprot.org/uniprot/Q59214 Q59214]
 +
** [http://www.uniprot.org/uniprot/Q27705 Q27705]
 +
** [http://www.uniprot.org/uniprot/P75476 P75476]
 +
** [http://www.uniprot.org/uniprot/P72830 P72830]
 +
** [http://www.uniprot.org/uniprot/Q55988 Q55988]
 +
** [http://www.uniprot.org/uniprot/Q49084 Q49084]
 +
** [http://www.uniprot.org/uniprot/O08333 O08333]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=atp:idp phosphotransferase, mitochondria}}
+
{{#set: common-name=6-phosphofructokinase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-2.7.1.11}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction 6PFRUCTPHOS-RXN

  • direction:
    • left-to-right
  • common-name:
    • 6-phosphofructokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
    • 7 reactions found over 9 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RIBOFLAVINSYNDEAM-RXN&oldid=24242"