Difference between revisions of "RXN-10078"

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(Created page with "Category:reaction == Reaction GLUTSEMIALDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** glutamate-5-semialdehyde dehydrogenase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction PEPCARBOXYKIN-RXN == * direction: ** left-to-right * common-name: ** phosphoenolpyruvate carboxykinase (atp) * ec-number: ** [http://enzyme.e...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTSEMIALDEHYDROG-RXN ==
+
== Reaction PEPCARBOXYKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamate-5-semialdehyde dehydrogenase
+
** phosphoenolpyruvate carboxykinase (atp)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41]
+
** [http://enzyme.expasy.org/EC/4.1.1.49 ec-4.1.1.49]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02923]]
+
* Gene: [[SJ14668]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ22406]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PROSYN-PWY]], L-proline biosynthesis I (from L-glutamate):
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis:
+
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation:
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
+
* [[GLUCONEO-PWY]], gluconeogenesis I:
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19543 19543]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18618 18618]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00341 R00341]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
+
** [http://www.uniprot.org/uniprot/P10963 P10963]
−
** [http://www.uniprot.org/uniprot/P45121 P45121]
+
** [http://www.uniprot.org/uniprot/Q9PP01 Q9PP01]
−
** [http://www.uniprot.org/uniprot/P53000 P53000]
+
** [http://www.uniprot.org/uniprot/P43923 P43923]
−
** [http://www.uniprot.org/uniprot/P07004 P07004]
+
** [http://www.uniprot.org/uniprot/P22259 P22259]
−
** [http://www.uniprot.org/uniprot/P17857 P17857]
+
** [http://www.uniprot.org/uniprot/P42066 P42066]
−
** [http://www.uniprot.org/uniprot/P45638 P45638]
+
** [http://www.uniprot.org/uniprot/P49292 P49292]
−
** [http://www.uniprot.org/uniprot/P54885 P54885]
+
** [http://www.uniprot.org/uniprot/O49547 O49547]
−
** [http://www.uniprot.org/uniprot/O04226 O04226]
+
** [http://www.uniprot.org/uniprot/Q9T074 Q9T074]
 +
** [http://www.uniprot.org/uniprot/Q39294 Q39294]
 +
** [http://www.uniprot.org/uniprot/Q9RC49 Q9RC49]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate-5-semialdehyde dehydrogenase}}
+
{{#set: common-name=phosphoenolpyruvate carboxykinase (atp)}}
−
{{#set: ec-number=ec-1.2.1.41}}
+
{{#set: ec-number=ec-4.1.1.49}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:28, 15 January 2021

Reaction PEPCARBOXYKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoenolpyruvate carboxykinase (atp)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-561, superpathway of glyoxylate cycle and fatty acid degradation:
    • 6 reactions found over 4 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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