Difference between revisions of "RXN-10702"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 2.7.7.8-RXN == * direction: ** reversible * common-name: ** polynucleotide phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.8...")
(Created page with "Category:reaction == Reaction RXN-10702 == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase ** opc6-3-hydroxyacyl-coa dehydrogenase * ec-num...")
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.7.7.8-RXN ==
+
== Reaction RXN-10702 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** polynucleotide phosphorylase
+
** 3-hydroxyacyl-coa dehydrogenase
 +
** opc6-3-hydroxyacyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.8 ec-2.7.7.8]
+
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Pi]][c] '''+''' 1 [[ssRNAs]][c] '''<=>''' 1 [[Nucleoside-Diphosphates]][c] '''+''' 1 [[ssRNAs]][c]
+
* 1 [[CPD-11523]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-11524]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10890]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03584]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07492]]
+
* Gene: [[SJ17348]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01444]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14408]]
+
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06127]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-735]], jasmonic acid biosynthesis:
 +
** '''16''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR116476
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22099 22099]
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
+
{{#set: common-name=opc6-3-hydroxyacyl-coa dehydrogenase|3-hydroxyacyl-coa dehydrogenase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07282 R07282]
+
{{#set: ec-number=ec-1.1.1.35}}
−
* UNIPROT:
+
{{#set: nb gene associated=8}}
−
** [http://www.uniprot.org/uniprot/P44584 P44584]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9PN44 Q9PN44]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P05055 P05055]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9JV72 Q9JV72]
 
−
** [http://www.uniprot.org/uniprot/P41121 P41121]
 
−
** [http://www.uniprot.org/uniprot/P50849 P50849]
 
−
** [http://www.uniprot.org/uniprot/P72659 P72659]
 
−
** [http://www.uniprot.org/uniprot/O24288 O24288]
 
−
** [http://www.uniprot.org/uniprot/Q8CJQ6 Q8CJQ6]
 
−
** [http://www.uniprot.org/uniprot/O32966 O32966]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=polynucleotide phosphorylase}}
 
−
{{#set: ec-number=ec-2.7.7.8}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-10702

  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxyacyl-coa dehydrogenase
    • opc6-3-hydroxyacyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-735, jasmonic acid biosynthesis:
    • 16 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR116476





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-10702&oldid=141497"