Difference between revisions of "RXN-11026"

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(Created page with "Category:reaction == Reaction ARGININE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** arginine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction RXN-11026 == * direction: ** left-to-right * common-name: ** acyl-coa oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGININE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-11026 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** arginine-trna ligase
+
** acyl-coa oxidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.19 ec-6.1.1.19]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[ARG-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11647]]
+
* Gene: [[SJ07452]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07451]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05085]]
+
* Gene: [[SJ13468]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13753]]
+
* Gene: [[SJ03090]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19669]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-7007]], methyl ketone biosynthesis (engineered):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7288]], fatty acid β-oxidation VII (yeast peroxisome):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5136]], fatty acid β-oxidation II (plant peroxisome):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-391]], fatty acid β-oxidation VI (mammalian peroxisome):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 31: Line 43:
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR116657
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20302 20302]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38960 38960]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O65202 O65202]
 +
** [http://www.uniprot.org/uniprot/O65201 O65201]
 +
** [http://www.uniprot.org/uniprot/O23977 O23977]
 +
** [http://www.uniprot.org/uniprot/P13711 P13711]
 +
** [http://www.uniprot.org/uniprot/P34355 P34355]
 +
** [http://www.uniprot.org/uniprot/P07872 P07872]
 +
** [http://www.uniprot.org/uniprot/P11356 P11356]
 +
** [http://www.uniprot.org/uniprot/P06598 P06598]
 +
** [http://www.uniprot.org/uniprot/Q00468 Q00468]
 +
** [http://www.uniprot.org/uniprot/Q15067 Q15067]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
−
* UNIPROT:
+
* PIR:
−
** [http://www.uniprot.org/uniprot/P40329 P40329]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
−
** [http://www.uniprot.org/uniprot/P35868 P35868]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
−
** [http://www.uniprot.org/uniprot/P43832 P43832]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
−
** [http://www.uniprot.org/uniprot/O51540 O51540]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
−
** [http://www.uniprot.org/uniprot/O67068 O67068]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
−
** [http://www.uniprot.org/uniprot/O59147 O59147]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
−
** [http://www.uniprot.org/uniprot/O83803 O83803]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
−
** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
−
** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
−
** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
−
** [http://www.uniprot.org/uniprot/P46906 P46906]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
−
** [http://www.uniprot.org/uniprot/Q57689 Q57689]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
−
** [http://www.uniprot.org/uniprot/O27496 O27496]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
−
** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
−
** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
−
** [http://www.uniprot.org/uniprot/P56128 P56128]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
−
** [http://www.uniprot.org/uniprot/P47618 P47618]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
−
** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
 
−
** [http://www.uniprot.org/uniprot/Q08888 Q08888]
 
−
** [http://www.uniprot.org/uniprot/P54136 P54136]
 
−
** [http://www.uniprot.org/uniprot/P38714 P38714]
 
−
** [http://www.uniprot.org/uniprot/Q05506 Q05506]
 
−
** [http://www.uniprot.org/uniprot/P75222 P75222]
 
−
** [http://www.uniprot.org/uniprot/P11875 P11875]
 
−
** [http://www.uniprot.org/uniprot/O23247 O23247]
 
−
** [http://www.uniprot.org/uniprot/O74781 O74781]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=arginine-trna ligase}}
+
{{#set: common-name=acyl-coa oxidase}}
−
{{#set: ec-number=ec-6.1.1.19}}
+
{{#set: ec-number=ec-1.3.3.6}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-11026

  • direction:
    • left-to-right
  • common-name:
    • acyl-coa oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7007, methyl ketone biosynthesis (engineered):
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7288, fatty acid β-oxidation VII (yeast peroxisome):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (plant peroxisome):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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