Difference between revisions of "RXN-11195"

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(Created page with "Category:reaction == Reaction GLUTCYSLIG-RXN == * direction: ** left-to-right * common-name: ** glutamate-cysteine ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.3....")
(Created page with "Category:reaction == Reaction DNA-LIGASE-NAD+-RXN == * direction: ** left-to-right * common-name: ** dna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTCYSLIG-RXN ==
+
== Reaction DNA-LIGASE-NAD+-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamate-cysteine ligase
+
** dna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.2.2 ec-6.3.2.2]
+
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 +
** [http://enzyme.expasy.org/EC/6.5.1.2 ec-6.5.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[L-GAMMA-GLUTAMYLCYSTEINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12601]]
+
* Gene: [[SJ15543]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ19344]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19108]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7255]], ergothioneine biosynthesis I (bacteria):
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GLUTATHIONESYN-PWY]], glutathione biosynthesis:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6840]], homoglutathione biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13286 13286]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00894 R00894]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00382 R00382]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19468 P19468]
+
** [http://www.uniprot.org/uniprot/P47496 P47496]
−
** [http://www.uniprot.org/uniprot/Q56277 Q56277]
+
** [http://www.uniprot.org/uniprot/Q9PHT0 Q9PHT0]
−
** [http://www.uniprot.org/uniprot/Q9JZI4 Q9JZI4]
+
** [http://www.uniprot.org/uniprot/Q9CIE4 Q9CIE4]
−
** [http://www.uniprot.org/uniprot/Q9JU83 Q9JU83]
+
** [http://www.uniprot.org/uniprot/P43813 P43813]
−
** [http://www.uniprot.org/uniprot/P48507 P48507]
+
** [http://www.uniprot.org/uniprot/O31498 O31498]
−
** [http://www.uniprot.org/uniprot/P48506 P48506]
+
** [http://www.uniprot.org/uniprot/O25336 O25336]
−
** [http://www.uniprot.org/uniprot/P32477 P32477]
+
** [http://www.uniprot.org/uniprot/O51502 O51502]
−
** [http://www.uniprot.org/uniprot/P0A6W9 P0A6W9]
+
** [http://www.uniprot.org/uniprot/P15042 P15042]
−
** [http://www.uniprot.org/uniprot/O22493 O22493]
+
** [http://www.uniprot.org/uniprot/P28719 P28719]
−
** [http://www.uniprot.org/uniprot/P46309 P46309]
+
** [http://www.uniprot.org/uniprot/P49422 P49422]
−
** [http://www.uniprot.org/uniprot/Q9TY17 Q9TY17]
+
** [http://www.uniprot.org/uniprot/P78021 P78021]
−
** [http://www.uniprot.org/uniprot/Q09768 Q09768]
+
** [http://www.uniprot.org/uniprot/P72588 P72588]
 +
** [http://www.uniprot.org/uniprot/Q49078 Q49078]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate-cysteine ligase}}
+
{{#set: common-name=dna ligase}}
−
{{#set: ec-number=ec-6.3.2.2}}
+
{{#set: ec-number=ec-6.5.1.2|ec-6.5.1.6}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:25, 15 January 2021

Reaction DNA-LIGASE-NAD+-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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