Difference between revisions of "RXN-11475"

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(Created page with "Category:reaction == Reaction 1.2.4.4-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction RXN-7658 == * direction: ** reversible * common-name: ** geranylgeranyl diphosphate reductase == Reaction formula == * 1 CPD-7002[c] '''+...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 1.2.4.4-RXN ==
+
== Reaction RXN-7658 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
** 3-methyl-2-oxobutanoate dehydrogenase
+
** geranylgeranyl diphosphate reductase
* ec-number:
 
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[CPD-7002]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ18449]]
+
* Gene: [[SJ15264]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ11017]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
+
* [[PWY-5063]], phytyl diphosphate biosynthesis:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13460 13460]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08754 R08754]
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P21839 P21839]
 
** [http://www.uniprot.org/uniprot/P21953 P21953]
 
** [http://www.uniprot.org/uniprot/P37940 P37940]
 
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
 
** [http://www.uniprot.org/uniprot/P37941 P37941]
 
** [http://www.uniprot.org/uniprot/P11178 P11178]
 
** [http://www.uniprot.org/uniprot/P12694 P12694]
 
** [http://www.uniprot.org/uniprot/P09061 P09061]
 
** [http://www.uniprot.org/uniprot/P09060 P09060]
 
** [http://www.uniprot.org/uniprot/P11960 P11960]
 
** [http://www.uniprot.org/uniprot/O84344 O84344]
 
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
 
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
 
** [http://www.uniprot.org/uniprot/P35738 P35738]
 
** [http://www.uniprot.org/uniprot/P50136 P50136]
 
** [http://www.uniprot.org/uniprot/O48615 O48615]
 
** [http://www.uniprot.org/uniprot/O03849 O03849]
 
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 
** [http://www.uniprot.org/uniprot/O82450 O82450]
 
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase}}
+
{{#set: common-name=geranylgeranyl diphosphate reductase}}
{{#set: ec-number=ec-1.2.4.4}}
+
{{#set: nb gene associated=1}}
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}

Revision as of 19:07, 14 January 2021

Reaction RXN-7658

  • direction:
    • reversible
  • common-name:
    • geranylgeranyl diphosphate reductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5063, phytyl diphosphate biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links