Difference between revisions of "RXN-115"

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(Created page with "Category:reaction == Reaction 2.4.1.155-RXN == * direction: ** left-to-right * common-name: ** alpha-1,6-mannosylglycoprotein 6-beta-n-acetylglucosaminyltransferase v * ec...")
(Created page with "Category:reaction == Reaction RXN-115 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.13 ec-1.14.11.13] == Reaction formula == * 1 ...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 2.4.1.155-RXN ==
+
== Reaction RXN-115 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** alpha-1,6-mannosylglycoprotein 6-beta-n-acetylglucosaminyltransferase v
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.4.1.155 ec-2.4.1.155]
+
** [http://enzyme.expasy.org/EC/1.14.11.13 ec-1.14.11.13]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[24-2-N-linked-Glycan]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[24-26-N-linked-Glycan]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-139]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-204]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ08576]]
+
* Gene: [[SJ08018]]
** Category: [[annotation]]
+
** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14675]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14670]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14672]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07557]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7426]], complex N-linked glycan biosynthesis (vertebrates):
+
* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation):
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR115106
+
* METANETX-RXN : MNXR107885
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16922 16922]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15006 15006]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R04665 R04665]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03008 R03008]
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q08834 Q08834]
 
** [http://www.uniprot.org/uniprot/Q09328 Q09328]
 
** [http://www.uniprot.org/uniprot/Q16408 Q16408]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=alpha-1,6-mannosylglycoprotein 6-beta-n-acetylglucosaminyltransferase v}}
+
{{#set: ec-number=ec-1.14.11.13}}
{{#set: ec-number=ec-2.4.1.155}}
+
{{#set: nb gene associated=5}}
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-115

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-102, gibberellin inactivation I (2β-hydroxylation):
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR107885
  • RHEA:
  • LIGAND-RXN: