Difference between revisions of "RXN-11837"

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(Created page with "Category:reaction == Reaction ARGINASE-RXN == * direction: ** reversible * common-name: ** arginase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1] == Rea...")
(Created page with "Category:reaction == Reaction RXN-11837 == * direction: ** left-to-right * common-name: ** 23s rrna pseudouridine1911/1915/1917 synthase * ec-number: ** [http://enzyme.exp...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGINASE-RXN ==
+
== Reaction RXN-11837 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** arginase
+
** 23s rrna pseudouridine1911/1915/1917 synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1]
+
** [http://enzyme.expasy.org/EC/5.4.99.23 ec-5.4.99.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[L-ORNITHINE]][c] '''+''' 1 [[UREA]][c]
+
* 1 [[23S-rRNA-uridine1911-1915-1917]][c] '''=>''' 1 [[23S-rRNA-pseudouridine1911-1915-1917]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12906]]
+
* Gene: [[SJ04758]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ22218]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19688]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00773]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-4984]], urea cycle:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway):
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6305]], superpathway of putrescine biosynthesis:
 
−
** '''4''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR117184
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20572 20572]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42525 42525]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00551 R00551]
+
{{#set: common-name=23s rrna pseudouridine1911/1915/1917 synthase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-5.4.99.23}}
−
** [http://www.uniprot.org/uniprot/P05089 P05089]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P07824 P07824]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P40906 P40906]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q7M0Z3 Q7M0Z3]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P14012 P14012]
 
−
** [http://www.uniprot.org/uniprot/P37818 P37818]
 
−
** [http://www.uniprot.org/uniprot/P49900 P49900]
 
−
** [http://www.uniprot.org/uniprot/P39138 P39138]
 
−
** [http://www.uniprot.org/uniprot/P53608 P53608]
 
−
** [http://www.uniprot.org/uniprot/P72703 P72703]
 
−
** [http://www.uniprot.org/uniprot/O68051 O68051]
 
−
** [http://www.uniprot.org/uniprot/O49046 O49046]
 
−
** [http://www.uniprot.org/uniprot/O76895 O76895]
 
−
** [http://www.uniprot.org/uniprot/P33280 P33280]
 
−
** [http://www.uniprot.org/uniprot/Q10066 Q10066]
 
−
** [http://www.uniprot.org/uniprot/P00812 P00812]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=arginase}}
 
−
{{#set: ec-number=ec-3.5.3.1}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=7}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-11837

  • direction:
    • left-to-right
  • common-name:
    • 23s rrna pseudouridine1911/1915/1917 synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR117184
  • RHEA:





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