Difference between revisions of "RXN-11841"

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(Created page with "Category:reaction == Reaction PHOSMANMUT-RXN == * direction: ** reversible * common-name: ** phosphomannomutase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.2.8 ec-5.4...")
(Created page with "Category:reaction == Reaction RXN-11841 == * direction: ** left-to-right * common-name: ** trna pseudouridine13 synthase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.9...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSMANMUT-RXN ==
+
== Reaction RXN-11841 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphomannomutase
+
** trna pseudouridine13 synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.2.8 ec-5.4.2.8]
+
** [http://enzyme.expasy.org/EC/5.4.99.27 ec-5.4.99.27]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MANNOSE-1P]][c] '''<=>''' 1 [[CPD-15979]][c]
+
* 1 [[tRNA-uridine13]][c] '''=>''' 1 [[tRNA-pseudouridine13]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02279]]
+
* Gene: [[SJ00580]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ03994]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14545]]
+
* Gene: [[SJ13453]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5659]], GDP-mannose biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7456]], &beta;-(1,4)-mannan degradation:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7586]], &beta;-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-882]], L-ascorbate biosynthesis I (plants, L-galactose pathway):
 
−
** '''6''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR101729
+
* METANETX-RXN : MNXR117188
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11143 11143]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42541 42541]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01818 R01818]
+
{{#set: common-name=trna pseudouridine13 synthase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-5.4.99.27}}
−
** [http://www.uniprot.org/uniprot/P26276 P26276]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P29955 P29955]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P24175 P24175]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P07283 P07283]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P47723 P47723]
 
−
** [http://www.uniprot.org/uniprot/Q57842 Q57842]
 
−
** [http://www.uniprot.org/uniprot/P47299 P47299]
 
−
** [http://www.uniprot.org/uniprot/Q59428 Q59428]
 
−
** [http://www.uniprot.org/uniprot/Q06951 Q06951]
 
−
** [http://www.uniprot.org/uniprot/Q49913 Q49913]
 
−
** [http://www.uniprot.org/uniprot/P75050 P75050]
 
−
** [http://www.uniprot.org/uniprot/Q51847 Q51847]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphomannomutase}}
 
−
{{#set: ec-number=ec-5.4.2.8}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-11841

  • direction:
    • left-to-right
  • common-name:
    • trna pseudouridine13 synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR117188
  • RHEA:





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