Difference between revisions of "RXN-11963"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ALLANTOICASE-RXN == * direction: ** left-to-right * common-name: ** allantoicase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.4 ec-3.5....")
(Created page with "Category:reaction == Reaction ExchangeSeed-CU+ == * direction: ** reversible == Reaction formula == * 1.0 CU+[C-BOUNDARY] '''<=>''' 1.0 CU+[e] == Gene(s) associate...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALLANTOICASE-RXN ==
+
== Reaction ExchangeSeed-CU+ ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** allantoicase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.5.3.4 ec-3.5.3.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ALLANTOATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1091]][c] '''+''' 1 [[UREA]][c]
+
* 1.0 [[CU+]][C-BOUNDARY] '''<=>''' 1.0 [[CU+]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11493]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5697]], allantoin degradation to ureidoglycolate I (urea producing):
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11017 11017]
+
{{#set: nb gene associated=0}}
−
* LIGAND-RXN:
+
{{#set: nb pathway associated=0}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02422 R02422]
+
{{#set: reconstruction category=manual}}
−
* UNIPROT:
+
{{#set: reconstruction tool=curation}}
−
** [http://www.uniprot.org/uniprot/P18407 P18407]
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
−
** [http://www.uniprot.org/uniprot/P25335 P25335]
+
{{#set: reconstruction source=import_from_medium}}
−
** [http://www.uniprot.org/uniprot/Q09913 Q09913]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=allantoicase}}
 
−
{{#set: ec-number=ec-3.5.3.4}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 15:32, 5 January 2021

Reaction ExchangeSeed-CU+

  • direction:
    • reversible

Reaction formula

  • 1.0 CU+[C-BOUNDARY] <=> 1.0 CU+[e]

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-11963&oldid=75459"