Difference between revisions of "RXN-11999"

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(Created page with "Category:reaction == Reaction NITRATE-REDUCTASE-NADPORNOPH-RXN == * direction: ** left-to-right * common-name: ** nitrate reductase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * direction: ** left-to-right * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NITRATE-REDUCTASE-NADPORNOPH-RXN ==
+
== Reaction BIOTIN-CARBOXYL-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nitrate reductase
+
** biotin carboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.7.1.2 ec-1.7.1.2]
+
** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[NITRATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[NITRITE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15446]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ14528]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12870]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02214]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12670]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17987]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00485]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06726]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5744]], glyoxylate assimilation:
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5743]], 3-hydroxypropanoate cycle:
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19063 19063]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M4W5 Q7M4W5]
+
** [http://www.uniprot.org/uniprot/Q06862 Q06862]
−
** [http://www.uniprot.org/uniprot/P27968 P27968]
+
** [http://www.uniprot.org/uniprot/O67483 O67483]
−
** [http://www.uniprot.org/uniprot/P27783 P27783]
+
** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
−
** [http://www.uniprot.org/uniprot/P39871 P39871]
+
** [http://www.uniprot.org/uniprot/Q58626 Q58626]
−
** [http://www.uniprot.org/uniprot/P49050 P49050]
+
** [http://www.uniprot.org/uniprot/P43873 P43873]
−
** [http://www.uniprot.org/uniprot/P49102 P49102]
+
** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
 +
** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
 +
** [http://www.uniprot.org/uniprot/P24182 P24182]
 +
** [http://www.uniprot.org/uniprot/O04983 O04983]
 +
** [http://www.uniprot.org/uniprot/O81273 O81273]
 +
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 +
** [http://www.uniprot.org/uniprot/Q39825 Q39825]
 +
** [http://www.uniprot.org/uniprot/O23960 O23960]
 +
** [http://www.uniprot.org/uniprot/O52602 O52602]
 +
** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nitrate reductase}}
+
{{#set: common-name=biotin carboxylase}}
−
{{#set: ec-number=ec-1.7.1.2}}
+
{{#set: ec-number=ec-6.3.4.14}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:06, 14 January 2021

Reaction BIOTIN-CARBOXYL-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5744, glyoxylate assimilation:
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle:
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 8 reactions found over 18 reactions in the full pathway
  • PWY0-1264, biotin-carboxyl carrier protein assembly:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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